molecular calculations
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Author(s):  
Farnaz Ghorbani ◽  
Behafarid Ghalandari ◽  
Chaozong Liu

Nanospheres have found versatile applications in the biomedical field; however, their possible harmful effects on immune and inflammatory systems are also a crucial concern. Inspired by a pomegranate structure, we demonstrated a novel structure for the nanostructured microspheres to overcome the drawbacks of nanospheres without compromising their merits. In this study, 3D pomegranate-like polydopamine microspheres (PDAMS) were synthesized by self-oxidative polymerization of dopamine hydrochloride. Herein, controlling the pH during polymerization led to synthesizing homogeneous agglomerated nano-sized spheres (400–2000 nm) and finally forming tunable and monodisperse micron-sized particles (21 µm) with uniform spherical shape porous microstructure. PDAMS interaction with the potential targets, Bone morphogenetic protein-2 (BMP2), Decorin, and Matrilin-1, was investigated via molecular calculations. Theoretical energy analysis revealed that PDAMS interaction with BMP2, Decorin, and Matrilin-1 is spontaneous, so that a protein layer formation on the PDAMS surface suggests application in bone and cartilage repair. It was also observed that PDAMS presented in-vitro degradation within 4 weeks. Here, disappearance of the UV-VIS spectrum peak at 280 nm is accompanied by the degradation of catechol groups. Pomegranate-like PDAMS support the biomimetic formation of hydroxyapatite-like layers, making them appropriate candidates for hard tissue applications. Herein, the appearance of peaks in XRD spectrum at 31.37, 39.57, 45.21, and 50.13° attributed to hydroxyapatite-like layers formation. All these results demonstrated that self-oxidative polymerization under a controllable pH can be a green and straightforward technique for preparing the pomegranate-like PDAMS and providing an innovative basis for further pre-clinical and clinical investigations.


2021 ◽  
Vol 1 (1) ◽  
Author(s):  
Julien Toulouse

A relativistic density-functional theory based on a Fock-space effective quantum-electrodynamics (QED) Hamiltonian using the Coulomb or Coulomb-Breit two-particle interaction is developed. This effective QED theory properly includes the effects of vacuum polarization through the creation of electron-positron pairs but does not include explicitly the photon degrees of freedom. It is thus a more tractable alternative to full QED for atomic and molecular calculations. Using the constrained-search formalism, a Kohn-Sham scheme is formulated in a quite similar way to non-relativistic density-functional theory, and some exact properties of the involved density functionals are studied, namely charge-conjugation symmetry and uniform coordinate scaling. The usual no-pair Kohn-Sham scheme is obtained as a well-defined approximation to this relativistic density-functional theory.


Author(s):  
Amanda Ribeiro Guimaraes ◽  
Rugles César Barbosa ◽  
Ana Cristina Tello Mora ◽  
Aldineia Pereira da Silva ◽  
Júlia Maria Aragon Alves ◽  
...  

The polynomial Generator Coordinate Hartree-Fock Gaussian basis sets, pGCHF, for the atoms Na, Mg, Al, Si, P, S, and Cl were generated using the generator coordinate method based on polynomial...


2020 ◽  
Vol 102 (5) ◽  
Author(s):  
Haruya Suzuki ◽  
Takuma Otomo ◽  
Ryusei Iida ◽  
Yutaro Sugiura ◽  
Toshiyuki Takayanagi ◽  
...  

2020 ◽  
Vol 152 (20) ◽  
pp. 204104 ◽  
Author(s):  
Trond Saue ◽  
Radovan Bast ◽  
André Severo Pereira Gomes ◽  
Hans Jørgen Aa. Jensen ◽  
Lucas Visscher ◽  
...  

2019 ◽  
Vol 118 (4) ◽  
pp. 1615646
Author(s):  
Stefano Battaglia ◽  
David Bouet ◽  
Alexis Lecoq ◽  
Stefano Evangelisti ◽  
Noelia Faginas-Lago ◽  
...  

2018 ◽  
Vol 32 (18) ◽  
pp. 1840014 ◽  
Author(s):  
Yijun Guo ◽  
Bing Wei ◽  
Xianbao Sun ◽  
Dongbao Yao ◽  
Xiang Zhou ◽  
...  

Other than being a carrier of the code of life deoxyribonucleic acid (DNA) can also be used as a kind of ideal biomaterial with good biocompatibility. The basis of DNA dynamic nanotechnology is the toehold-mediated strand displacement reactions. Utilizing the specificity and predictability of Watson–Crick base pairing, and the programmability of the base sequence of DNA, researchers can construct the molecular machine and precisely control its operation to realize various complex molecular calculations. In this paper, we reviewed the progress of DNA structure and mechanical properties in recent years, discussed the microcosmic mechanism of DNA strand replacement reaction, and introduced the latest achievements in DNA molecular computing and its application in DNA constant temperature self-assembly.


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