The effects of habituation on boldness of urban and rural song sparrows (Melospiza melodia)

As urbanization increases globally, wildlife species are changing their behaviour in many ways. Urban animals are often bolder, or less fearful of new stimuli, than rural animals. While adaptation can drive behavioural changes in urban animals, other factors, such as learning or habituation, can also lead to behavioural modifications. To determine how repeated exposure to a non-threatening human affects song sparrow (Melospiza melodia) behaviour in urban and rural habitat, we measured boldness as flight initiation distance (FID), for 5 consecutive days. We found that urban birds had consistently lower FID’s than their rural counterparts from days 1–4, yet there was no difference in rural and urban FID by trial 5. FID decreased over 5 days of repeated trials in the rural populations, but not the urban. These results suggest that habituation can occur quickly in rural birds and may account for the greater boldness we typically see in urban populations.

No evidence that songbirds use odour cues to avoid malaria-infected conspecifics

Many animals have evolved mechanisms to detect and avoid parasitized conspecifics, primarily through odour cues, but whether birds are capable of odour-mediated parasite avoidance is unknown. Recently, we showed that exposing song sparrows (Melospiza melodia) to avian malaria parasites (Plasmodium sp.) alters the chemical composition of their preen oil, which is the major source of body odour in birds. Here, we presented song sparrows with preen oil from uninfected (sham-inoculated) and malaria-infected conspecifics, predicting that birds would spend more time with odour cues from uninfected than infected birds. Birds without detectable malarial infections spent about 50% more time with preen oil from uninfected than infected conspecifics, and females spent nearly twice as much time with preen oil from uninfected than infected conspecifics. However, neither difference was statistically significant. Song sparrows may be able to detect odour cues of infection, but further experiments are needed to confirm or refute this.

A High-Quality Genome Assembly of the North American Song Sparrow, Melospiza melodia

The song sparrow, Melospiza melodia, is one of the most widely distributed species of songbirds found in North America. It has been used in a wide range of behavioral and ecological studies. This species’ pronounced morphological and behavioral diversity across populations makes it a favorable candidate in several areas of biomedical research. We have generated a high-quality de novo genome assembly of M. melodia using Illumina short read sequences from genomic and in vitro proximity-ligation libraries. The assembled genome is 978.3 Mb, with a physical coverage of 24.9×, N50 scaffold size of 5.6 Mb and N50 contig size of 31.7 Kb. Our genome assembly is highly complete, with 87.5% full-length genes present out of a set of 4,915 universal single-copy orthologs present in most avian genomes. We annotated our genome assembly and constructed 15,086 gene models, a majority of which have high homology to related birds, Taeniopygia guttata and Junco hyemalis. In total, 83% of the annotated genes are assigned with putative functions. Furthermore, only ∼7% of the genome is found to be repetitive; these regions and other non-coding functional regions are also identified. The high-quality M. melodia genome assembly and annotations we report will serve as a valuable resource for facilitating studies on genome structure and evolution that can contribute to biomedical research and serve as a reference in population genomic and comparative genomic studies of closely related species.

A high-quality genome assembly of the North American Song Sparrow, Melospiza melodia

The song sparrow, Melospiza melodia, is one of the most widely distributed species of songbirds found in North America. It has been used in a wide range of behavioral and ecological studies. This species’ pronounced morphological and behavioral diversity across populations makes it a favorable candidate in several areas of biomedical research. We have generated a high-quality de novo genome assembly of M. melodia using Illumina short read sequences from genomic and in vitro proximity-ligation libraries. The assembled genome is 978.3 Mb, with a coverage of 24.9×, N50 scaffold size of 5.6 Mb and N50 contig size of 31.7 Kb. Genes within our genome assembly are largely complete, with 87.5% full-length genes present out of a set of 4,915 universal single-copy orthologs present in most avian genomes. We annotated our genome assembly and constructed 15,086 gene models, a majority of which have high homology to related birds, Taeniopygia guttata and Junco hyemalis. In total, 83% of the annotated genes are assigned with putative functions. Furthermore, only ~7% of the genome is found to be repetitive; these regions and other non-coding functional regions are also identified. The high-quality M. melodia genome assembly and annotations we report will serve as a valuable resource for facilitating studies on genome structure and evolution that can contribute to biomedical research and serve as a reference in population genomic and comparative genomic studies of closely related species.

Bird Song Learning is Mutually Beneficial for Tutee and Tutor

Song learning is generally assumed to be beneficial for a young songbird, but merely incidental, without costs or benefits, for the older song ‘tutors’. In the present study we contrast two mutually exclusive hypotheses about the tutor/tutee relationship: (1) that it is cooperative, or at least mutually tolerant, with tutor and tutee mutually benefiting from their relationship, vs. (2) that it is competitive, with tutor and tutee competing over territory, so that one or the other suffers negative fitness consequences of their relationship. In a field study of three consecutive cohorts of song sparrows (Melospiza melodia) we determined the older bird (primary tutor) from whom the young bird (tutee) learned most of his songs, and how long tutee and primary tutor survived subsequently. We found that the more songs a tutee learns from his primary tutor, the longer their mutual survival on their respective territories. This study provides the first evidence of a mutual benefit of bird song learning and teaching in nature.

Long-term winter-site fidelity in Song Sparrows (Melospiza melodia)

In migratory animals, the degree to which individuals return to the same wintering sites across multiple years can affect fitness and population dynamics, and thus has important implications for conservation. Despite this, long-term evaluations of wintering-site fidelity are rare for migratory birds: many populations are intensively studied on their breeding grounds but tracking the migratory movements of small birds once they leave the breeding grounds is challenging. To evaluate patterns of overwintering location and fidelity, we collected winter-grown claw tissue from 301 Song Sparrows (Melospiza melodia; 449 samples) captured in spring at their breeding grounds over 6 consecutive yr and assessed stable hydrogen isotope (δ2Hc) values to determine within-individual repeatability and between-year variation in wintering latitudes. We also retrieved useable data from 8 geolocators over 2 consecutive winters. Geolocator-derived wintering positions correlated with origins based on δ2Hc values. Consistent with previous findings, male δ2Hc values reflected more northerly wintering areas than those of females, indicating shorter latitudinal migration distances for males, but the magnitude of the sex difference varied across years. The distribution of wintering latitudes was generally consistent among years, except for the 2015 舑2016 winter, which had unusually negative δ2Hc values. Values of δ2Hc were repeatable for males but not for females, suggesting that winter-site fidelity could differ between sexes. The data presented here emphasize the importance of tracking migratory populations across multiple years to uncover factors affecting population dynamics.