A Medical Image Registration Method Based on Progressive Images

Background. Medical image registration is an essential task for medical image analysis in various applications. In this work, we develop a coarse-to-fine medical image registration method based on progressive images and SURF algorithm (PI-SURF) for higher registration accuracy. Methods. As a first step, the reference image and the floating image are fused to generate multiple progressive images. Thereafter, the floating image and progressive image are registered to get the coarse registration result based on the SURF algorithm. For further improvement, the coarse registration result and the reference image are registered to perform fine image registration. The appropriate progressive image has been investigated by experiments. The mutual information (MI), normal mutual information (NMI), normalized correlation coefficient (NCC), and mean square difference (MSD) similarity metrics are used to demonstrate the potential of the PI-SURF method. Results. For the unimodal and multimodal registration, the PI-SURF method achieves the best results compared with the mutual information method, Demons method, Demons+B-spline method, and SURF method. The MI, NMI, and NCC of PI-SURF are improved by 15.5%, 1.31%, and 7.3%, respectively, while MSD decreased by 13.2% for the multimodal registration compared with the optimal result of the state-of-the-art methods. Conclusions. The extensive experiments show that the proposed PI-SURF method achieves higher quality of registration.

The developing Human Connectome Project (dHCP) automated resting-state functional processing framework for newborn infants

The developing Human Connectome Project (dHCP) aims to create a detailed 4-dimensional connectome of early life spanning 20 to 45 weeks post-menstrual age. This is being achieved through the acquisition of multi-modal MRI data from over 1000 in- and ex-utero subjects combined with the development of optimised pre-processing pipelines. In this paper we present an automated and robust pipeline to minimally pre-process highly confounded neonatal resting-state fMRI data, robustly, with low failure rates and high quality-assurance. The pipeline has been designed to specifically address the challenges that neonatal data presents including low and variable contrast and high levels of head motion. We provide a detailed description and evaluation of the pipeline which includes integrated slice-to-volume motion correction and dynamic susceptibility distortion correction, a robust multimodal registration approach, bespoke ICA-based denoising, and an automated QC framework. We assess these components on a large cohort of dHCP subjects and demonstrate that processing refinements integrated into the pipeline provide substantial reduction in movement related distortions, resulting in significant improvements in SNR, and detection of high quality RSNs from neonates.HighlightsAn automated and robust pipeline to minimally pre-process highly confounded neonatal fMRI dataIncludes integrated dynamic distortion and slice-to-volume motion correctionA robust multimodal registration approach which includes custom neonatal templatesIncorporates an automated and self-reporting QC framework to quantify data quality and identify issues for further inspectionData analysis of 538 infants imaged at 26-45 weeks post-menstrual age