Visualising plant colonisation by beneficial bacteria: a key step to improve the understanding of plant–microbe interactions

Plants contain diverse microorganisms that interact with their hosts and with each other. Beneficial bacteria can be utilised on crops to protect plants against biotic and abiotic stresses and to stimulate plant growth. However, the behaviour of specific microorganisms on and within plants is still underexplored. Knowledge of bacterial colonisation behaviour and the precise ecological niches in a natural environment of a target strain can lead to better application and utilisation of these microorganisms for crop enhancement, in different plant soil environments, and for both biocontrol and biofertilisation approaches in organic and integrated protection systems. Understanding colonisation characteristics will also provide information on putative new strategies for maximising inoculation efficiency and thus crop enhancement. In this chapter, we set out how beneficial bacteria can colonise their host plants under various conditions and demonstrate how an understanding of plant colonisation can be used to improve bacterial application approaches.

Characterisation of the biosurfactants from phyllosphere colonising Pseudomonads and their effect on plant colonisation and diesel degradation

Biosurfactant production is a common trait in leaf surface colonising bacteria that has been associated with increased survival and movement on leaves. At the same time the ability to degrade aliphatics is common in biosurfactant-producing leaf colonisers. Pseudomonads are common leaf colonisers and have been recognised for their ability to produce biosurfactants and degrade aliphatic compounds. In this study, we have investigated the role of biosurfactants in four non-plant plant pathogenic Pseudomonas strains by performing a series of experiments to characterise the surfactant properties, and their role during leaf colonisation and diesel degradation. The produced biosurfactants were identified using mass-spectrometry. Two strains produced viscosin-like biosurfactants and the other two produced Massetolide A-like biosurfactants which aligned with the phylogenetic relatedness between the strains. To further investigate the role of surfactant production, random Tn5 transposon mutagenesis was performed to generate knockout mutants. The knockout mutants were compared to their respective wildtypes in their ability to colonise gnotobiotic Arabidopsis thaliana and to degrade diesel. It was not possible to detect negative effects during plant colonisation in direct competition or individual colonisation experiments. When grown on diesel, knockout mutants grew significantly slower compared to their respective wildtypes. By adding isolated wildtype biosurfactants it was possible to complement the growth of the knockout mutants.ImportanceMany leaf colonising bacteria produce surfactants and are able to degrade aliphatic compounds, however, if surfactant production provides a competitive advantage during leaf colonisation is unclear. Furthermore, it is unclear if leaf colonisers take advantage of the aliphatic compounds that constitute the leaf cuticle and cuticular waxes. Here we test the effect of surfactant production on leaf colonisation and demonstrate that the lack of surfactant production decreases the ability to degrade aliphatic compounds. This indicates that leaf surface dwelling, surfactant producing bacteria contribute to degradation of environmental hydrocarbons and may be able to utilise leaf surface waxes. This has implications for plant-microbe interactions and future studies.

Vascular plant colonisation of Surtsey Island (1965-1990) - a dataset

The process of ecosystem development over time that takes place on a new substrate devoid of biological activity (such as, for example, lava) is called primary succession. Research on primary succession is not easy, as it is limited to rare occasions when a piece of land totally lacking in any pre-existing life occurs. The emergence of volcanic islands is such an occasion; it is a unique event that allows a natural experiment in the study of colonisation processes and primary succession. Surtsey (located in the Vestmannaeyar archipelago off the southern coast of Iceland) is an iconic example of a place where primary succession has been studied for decades and where human disturbance has been minimised due to significant geographic isolation and early protection efforts. Here, we present a georeferenced dataset of vacular plant occurrences collected during the field studies carried out on Surtsey Island during the first three decades of its existence. To date, no dataset containing plant distribution data documenting the process of early stages of colonisation of Surtsey has been published. What is more, to our knowledge, there is no other dataset that can be compared with our Surtsey data that is readily available for researchers working on plant colonisation dynamics and primary succession processes. Here, we present a complete, geo-referenced dataset of all plant occurrences (10,094 in total) collected on Surtsey between 1965 and 1990.