Visualising plant colonisation by beneficial bacteria: a key step to improve the understanding of plant–microbe interactions

2021 ◽  
pp. 87-102
Author(s):  
Stéphane Compant ◽  
◽  
Günter Brader ◽  
Angela Sessitsch ◽  
◽  
...  
Keyword(s):  
Abiotic Stresses ◽  
Ecological Niches ◽  
Beneficial Bacteria ◽  
Plant Colonisation ◽  
Plant Soil ◽  
Protection Systems ◽  
Microbe Interactions ◽  
Stimulate Plant Growth ◽  
Crop Enhancement ◽  
New Strategies

Plants contain diverse microorganisms that interact with their hosts and with each other. Beneficial bacteria can be utilised on crops to protect plants against biotic and abiotic stresses and to stimulate plant growth. However, the behaviour of specific microorganisms on and within plants is still underexplored. Knowledge of bacterial colonisation behaviour and the precise ecological niches in a natural environment of a target strain can lead to better application and utilisation of these microorganisms for crop enhancement, in different plant soil environments, and for both biocontrol and biofertilisation approaches in organic and integrated protection systems. Understanding colonisation characteristics will also provide information on putative new strategies for maximising inoculation efficiency and thus crop enhancement. In this chapter, we set out how beneficial bacteria can colonise their host plants under various conditions and demonstrate how an understanding of plant colonisation can be used to improve bacterial application approaches.

scholarly journals Interactive Role of Silicon and Plant–Rhizobacteria Mitigating Abiotic Stresses: A New Approach for Sustainable Agriculture and Climate Change

Plants ◽  
2020 ◽  
Vol 9 (9) ◽  
pp. 1055
Author(s):  
Krishan K. Verma ◽  
Xiu-Peng Song ◽  
Dong-Mei Li ◽  
Munna Singh ◽  
Vishnu D. Rajput ◽  
...  
Keyword(s):  
Plant Growth ◽  
Abiotic Stresses ◽  
Crop Production ◽  
Plant Growth Promoting Rhizobacteria ◽  
Crop Productivity ◽  
Agricultural Crop ◽  
Plant Growth Promoting ◽  
Microbe Interactions ◽  
Stimulate Plant Growth ◽  
Excess Quantity

Abiotic stresses are the major constraints in agricultural crop production across the globe. The use of some plant–microbe interactions are established as an environment friendly way of enhancing crop productivity, and improving plant development and tolerance to abiotic stresses by direct or indirect mechanisms. Silicon (Si) can also stimulate plant growth and mitigate environmental stresses, and it is not detrimental to plants and is devoid of environmental contamination even if applied in excess quantity. In the present review, we elaborate the interactive application of Si and plant growth promoting rhizobacteria (PGPRs) as an ecologically sound practice to increase the plant growth rate in unfavorable situations, in the presence of abiotic stresses. Experiments investigating the combined use of Si and PGPRs on plants to cope with abiotic stresses can be helpful in the future for agricultural sustainability.

scholarly journals Interplay of Darwinian and frequency-dependent selection in the host-associated microbial population

2005 ◽  
Vol 3 (3) ◽  
pp. 3-11
Author(s):  
Nikolay I Vorobyov ◽  
Nikolay A Provorov
Keyword(s):  
Mathematical Simulation ◽  
Microbial Population ◽  
Genetically Modified ◽  
Ecological Niches ◽  
Soil System ◽  
Selection Pressures ◽  
Frequency Dependent ◽  
Frequency Dependent Selection ◽  
Plant Soil ◽  
Balanced Polymorphism

The method for mathematical simulation is suggested to analyze the balanced polymorphism in rhizobia population generated due to the interplay of Darwinian and frequency-dependent selection. Analysis of the model suggested that this polymorphism is determined not only by the selection pressures but also by the capacities of ecological niches occupied by bacteria in the «plant-soil» system. The model may be used for analyzing the selective processes in various symbiotic systems and for predicting the consequences of releasing of genetically modified plant symbionts into environment.

scholarly journals The impact of elevated temperature and drought on the ecology and evolution of plant–soil microbe interactions

2019 ◽  
Vol 108 (1) ◽  
pp. 337-352 ◽  
Author(s):  
Pil U. Rasmussen ◽  
Alison E. Bennett ◽  
Ayco J. M. Tack
Keyword(s):  
Elevated Temperature ◽  
Soil Microbe ◽  
Plant Soil ◽  
Microbe Interactions ◽  
The Impact

scholarly journals Chemically Mediated Microbial “Gardening” Capacity of a Seaweed Holobiont Is Dynamic

2020 ◽  
Vol 8 (12) ◽  
pp. 1893
Author(s):  
Mahasweta Saha ◽  
Shawn Dove ◽  
Florian Weinberger
Keyword(s):  
Pathogenic Bacteria ◽  
Abiotic Factors ◽  
Terrestrial Plants ◽  
Beneficial Bacteria ◽  
Low Salinity ◽  
Aquatic Flora ◽  
Salinity Levels ◽  
Microbe Interactions ◽  
Host Microbe Interactions ◽  
Over Time

Terrestrial plants are known to “garden” the microbiota of their rhizosphere via released metabolites (that can attract beneficial microbes and deter pathogenic microbes). Such a “gardening” capacity is also known to be dynamic in plants. Although microbial “gardening” has been recently demonstrated for seaweeds, we do not know whether this capacity is a dynamic property in any aquatic flora like in terrestrial plants. Here, we tested the dynamic microbial “gardening” capacity of seaweeds using the model invasive red seaweed Agarophyton vermiculophyllum. Following an initial extraction of surface-associated metabolites (immediately after field collection), we conducted a long-term mesocosm experiment for 5 months to test the effect of two different salinities (low = 8.5 and medium = 16.5) on the microbial “gardening” capacity of the alga over time. We tested “gardening” capacity of A. vermiculophyllum originating from two different salinity levels (after 5 months treatments) in settlement assays against three disease causing pathogenic bacteria and seven protective bacteria. We also compared the capacity of the alga with field-collected samples. Abiotic factors like low salinity significantly increased the capacity of the alga to deter colonization by pathogenic bacteria while medium salinity significantly decreased the capacity of the alga over time when compared to field-collected samples. However, capacity to attract beneficial bacteria significantly decreased at both tested salinity levels when compared to field-collected samples. Dynamic microbial “gardening” capacity of a seaweed to attract beneficial bacteria and deter pathogenic bacteria is demonstrated for the first time. Such a dynamic capacity as found in the current study could also be applicable to other aquatic host–microbe interactions. Our results may provide an attractive direction of research towards manipulation of salinity and other abiotic factors leading to better defended A. vermiculophyllum towards pathogenic bacteria thereby enhancing sustained production of healthy A. vermiculophyllum in farms.

scholarly journals Ecological relevance of strigolactones in nutrient uptake and other abiotic stresses, and in plant-microbe interactions below-ground

2015 ◽  
Vol 394 (1-2) ◽  
pp. 1-19 ◽  
Author(s):  
Beatriz Andreo-Jimenez ◽  
Carolien Ruyter-Spira ◽  
Harro J. Bouwmeester ◽  
Juan A. Lopez-Raez
Keyword(s):  
Nutrient Uptake ◽  
Abiotic Stresses ◽  
Ecological Relevance ◽  
Microbe Interactions ◽  
Below Ground

scholarly journals Identification and Profiling of Conserved MicroRNAs in Different Developmental Stages of Crown Imperial (Fritillaria Imperialis L.) using High-throughput Sequencing

2021 ◽  
Author(s):  
Fereshteh Ahmadi Teshniz ◽  
Behrouz Shiran ◽  
Sadegh Mousavi-Fard ◽  
Hossein Fallahi ◽  
Bojana Banović Đeri
Keyword(s):  
Plant Species ◽  
Abiotic Stresses ◽  
Regulatory Networks ◽  
High Throughput Sequencing ◽  
Developmental Stages ◽  
Expression Patterns ◽  
Practical Application ◽  
Sequencing Technologies ◽  
New Strategies ◽  
Different Tissues

Abstract Novel strategies for improvement of plants’ ornamental and other properties relay on miRNA control of differential plant gene expression modulation. Still, in response to the same abiotic stresses, some conserved miRNA families show different expression patterns in different plant species. In parallel, the use of deep sequencing technologies reveals new levels of complexity of regulatory networks in plants through identification of new miRNAs. These are two major reasons why more studies are needed before envisioned new strategies may take their course in practical application domain. This research revealed 21 conserved miRNAs, matching 15 miRNA families, in Fritilaria imperialis. Among identified conserved miRNA families in crown imperial, miR166, miR169 and miR396 families were the most abundant ones. The expression of seven conserved miRNAs (Fim-miR156b, Fim-miR159, Fim-miR166a-5p, Fim-miR169d-5p, Fim-miR171c, Fim-miR393 and Fim-miR396e-3p) was further investigated in different tissues and three developmental stages, suggesting different roles these miRNAs have in growth and development of crown imperial. Gained knowledge from this research can open the door to find efficient ways to secure crown imperial survival, preservation and utilization and if proven useful may be applied in other plant species as well.

scholarly journals Sponge–Microbe Interactions on Coral Reefs: Multiple Evolutionary Solutions to a Complex Environment

2021 ◽  
Vol 8 ◽  
Author(s):  
Christopher J. Freeman ◽  
Cole G. Easson ◽  
Cara L. Fiore ◽  
Robert W. Thacker
Keyword(s):  
Coral Reefs ◽  
Marine Sponges ◽  
Future Research ◽  
Ecological Niches ◽  
Trade Offs ◽  
Contemporary Work ◽  
Microbe Interactions ◽  
Microbial Symbionts ◽  
Host Sponge ◽  
Nutritional Benefits

Marine sponges have been successful in their expansion across diverse ecological niches around the globe. Pioneering work attributed this success to both a well-developed aquiferous system that allowed for efficient filter feeding on suspended organic matter and the presence of microbial symbionts that can supplement host heterotrophic feeding with photosynthate or dissolved organic carbon. We now know that sponge-microbe interactions are host-specific, highly nuanced, and provide diverse nutritional benefits to the host sponge. Despite these advances in the field, many current hypotheses pertaining to the evolution of these interactions are overly generalized; these over-simplifications limit our understanding of the evolutionary processes shaping these symbioses and how they contribute to the ecological success of sponges on modern coral reefs. To highlight the current state of knowledge in this field, we start with seminal papers and review how contemporary work using higher resolution techniques has both complemented and challenged their early hypotheses. We outline different schools of thought by discussing evidence of symbiont contribution to both host ecological divergence and convergence, nutritional specificity and plasticity, and allopatric and sympatric speciation. Based on this synthesis, we conclude that the evolutionary pressures shaping these interactions are complex, with influences from both external (nutrient limitation and competition) and internal (fitness trade-offs and evolutionary constraints) factors. We outline recent controversies pertaining to these evolutionary pressures and place our current understanding of these interactions into a broader ecological and evolutionary framework. Finally, we propose areas for future research that we believe will lead to important new developments in the field.

scholarly journals The Potential Application of Endophytes in Management of Stress from Drought and Salinity in Crop Plants

2021 ◽  
Vol 9 (8) ◽  
pp. 1729
Author(s):  
Hariom Verma ◽  
Dharmendra Kumar ◽  
Vinod Kumar ◽  
Madhuree Kumari ◽  
Sandeep Kumar Singh ◽  
...  
Keyword(s):  
Abiotic Stresses ◽  
Potential Application ◽  
Crop Yields ◽  
Climatic Conditions ◽  
Crop Plants ◽  
Stress Factors ◽  
Ph Variation ◽  
Regulatory Systems ◽  
Protection Systems ◽  
Potential Applications

Endophytic microorganisms present inside the host plant play an essential role in host fitness, nutrient supply and stress tolerance. Endophytes are often used in sustainable agriculture as biofertilizers, biopesticides and as inoculants to mitigate abiotic stresses including salinity, drought, cold and pH variation in the soil. In changing climatic conditions, abiotic stresses create global challenges to achieve optimum crop yields in agricultural production. Plants experience stress conditions that involve endogenous boosting of their immune system or the overexpression of their defensive redox regulatory systems with increased reactive oxygen species (ROS). However, rising stress factors overwhelm the natural redox protection systems of plants, which leads to massive internal oxidative damage and death. Endophytes are an integral internal partner of hosts and have been shown to mitigate abiotic stresses via modulating local or systemic mechanisms and producing antioxidants to counteract ROS in plants. Advancements in omics and other technologies have been made, but potential application of endophytes remains largely unrealized. In this review article, we will discuss the diversity, population and interaction of endophytes with crop plants as well as potential applications in abiotic stress management.

scholarly journals Plant stimulants and horticultural production

2020 ◽  
Vol 5 (6) ◽  
Author(s):  
Waleed Fouad Abobatta
Keyword(s):  
Plant Growth ◽  
Fruit Quality ◽  
Mycorrhizal Fungi ◽  
Abiotic Stresses ◽  
Crop Production ◽  
Plant Tolerance ◽  
Growth Increase ◽  
Promote Plant Growth ◽  
Stimulate Plant Growth ◽  
Micro Organisms

Plant stimulants is an organic substance and micro-organisms, used by small quantities, Biostimulants categorize according to their nature, modes of action, and types of effects on crops, there are main groups of plant stimulants include Protein hydrolysates, Humate substances, Seaweed extracts, Biopolymers (Chitosan and other polymers), and Microbial biostimulants like mycorrhizal, non-mycorrhizal fungi, Rhizobium, and Trichoderma. Horticulture crop production facing several challenges particularly abiotic stresses and malnutrition resulting in yield loss and affects negatively fruit quality. The main effects of plant stimulants due to its working as the auxin-like effect, enhancing Nitrogen uptake, and stimulate plant growth. There is various stimulation effects on horticulture crops including promote plant growth, increase plant tolerance for biotic and abiotic stresses. Applying plant stimulants to plants or the rhizosphere stimulating plant metabolic processes, increase the efficiency of the nutrients, and increase plant tolerance to abiotic stress, consequently, improving plant growth increases yield, and enhancing fruit quality.

scholarly journals Defining the function of SUMO system in pod development and abiotic stresses in Peanut

2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Yiyang Liu ◽  
Jiao Zhu ◽  
Sheng Sun ◽  
Feng Cui ◽  
Yan Han ◽  
...  
Keyword(s):  
Abiotic Stresses ◽  
Developmental Process ◽  
Expression Patterns ◽  
Rna Seq ◽  
Specific Expression ◽  
Genome Wide ◽  
Pod Development ◽  
Core Components ◽  
Arachis Duranensis ◽  
New Strategies

Abstract Background Posttranslational modification of proteins by small ubiquitin like modifier (SUMO) proteins play an important role during the developmental process and in response to abiotic stresses in plants. However, little is known about SUMOylation in peanut (Arachis hypogaea L.), one of the world’s major food legume crops. In this study, we characterized the SUMOylation system from the diploid progenitor genomes of peanut, Arachis duranensis (AA) and Arachis ipaensis (BB). Results Genome-wide analysis revealed the presence of 40 SUMO system genes in A. duranensis and A. ipaensis. Our results showed that peanut also encodes a novel class II isotype of the SCE1, which was previously reported to be uniquely present in cereals. RNA-seq data showed that the core components of the SUMOylation cascade SUMO1/2 and SCE1 genes exhibited pod-specific expression patterns, implying coordinated regulation during pod development. Furthermore, both transcripts and conjugate profiles revealed that SUMOylation has significant roles during the pod development. Moreover, dynamic changes in the SUMO conjugates were observed in response to abiotic stresses. Conclusions The identification and organization of peanut SUMO system revealed SUMOylation has important roles during stress defense and pod development. The present study will serve as a resource for providing new strategies to enhance agronomic yield and reveal the mechanism of peanut pod development.

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