in situ mrna hybridization
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eLife ◽  
2020 ◽  
Vol 9 ◽  
Author(s):  
Nora Yucel ◽  
Jessie Axsom ◽  
Yifan Yang ◽  
Li Li ◽  
Joshua H Rhoades ◽  
...  

Endothelial cells (ECs) are widely heterogenous depending on tissue and vascular localization. Jambusaria et al. recently demonstrated that ECs in various tissues surprisingly possess mRNA signatures of their underlying parenchyma. The mechanism underlying this observation remains unexplained, and could include mRNA contamination during cell isolation, in vivo mRNA paracrine transfer from parenchymal cells to ECs, or cell-autonomous expression of these mRNAs in ECs. Here, we use a combination of bulk RNASeq, single-cell RNASeq datasets, in situ mRNA hybridization, and most importantly ATAC-Seq of FACS-isolated nuclei, to show that cardiac ECs actively express cardiomyocyte myofibril (CMF) genes and have open chromatin at CMF gene promoters. These open chromatin sites are enriched for sites targeted by cardiac transcription factors, and closed upon expansion of ECs in culture. Together, these data demonstrate unambiguously that the expression of CMF genes in ECs is cell-autonomous, and not simply a result of technical contamination or paracrine transfers of mRNAs, and indicate that local cues in the heart in vivo unexpectedly maintain fully open chromatin in ECs at genes previously thought limited to cardiomyocytes.


Author(s):  
Robert Lea ◽  
Boyan Bonev ◽  
Eamon Dubaissi ◽  
Peter D. Vize ◽  
Nancy Papalopulu

Plant Methods ◽  
2010 ◽  
Vol 6 (1) ◽  
pp. 7 ◽  
Author(s):  
Jaana Vuosku ◽  
Suvi Sutela ◽  
Mira Sääskilahti ◽  
Johanna Kestilä ◽  
Anne Jokela ◽  
...  

2006 ◽  
Vol 29 (2) ◽  
pp. 91-95
Author(s):  
Yuichi Sato ◽  
Benio Tsuchiya ◽  
Ryo Nagashio ◽  
Shi-Xu Jiang ◽  
Isao Okayasu

2001 ◽  
Vol 280 (1) ◽  
pp. C12-C21 ◽  
Author(s):  
B. Paul Herring ◽  
Gary E. Lyons ◽  
April M. Hoggatt ◽  
Patricia J. Gallagher

Telokin is a 17-kDa protein with an amino acid sequence that is identical to the COOH terminus of the 130-kDa myosin light chain kinase (MLCK). Telokin mRNA is transcribed from a second promoter, located within an intron, in the 3′ region of the MLCK gene. In the current study, we show by in situ mRNA hybridization that telokin mRNA is restricted to the smooth muscle cell layers within adult smooth muscle tissues. In situ mRNA analysis of mouse embryos also revealed that telokin expression is restricted to smooth muscle tissues during embryonic development. Telokin mRNA expression was first detected in mouse gut at embryonic day 11.5; no telokin expression was detected in embryonic cardiac or skeletal muscle. Expression of telokin was also found to be regulated during postnatal development of the male and female reproductive tracts. In both uterus and vas deferens, telokin protein expression greatly increased between days 7 and 14 of postnatal development. The increase in telokin expression correlated with an increase in the expression of several other smooth muscle-restricted proteins, including smooth muscle myosin and α-actin.


1998 ◽  
Vol 806 (1) ◽  
pp. 8-15 ◽  
Author(s):  
Satomi Kasashima ◽  
Youko Muroishi ◽  
Hiroko Futakuchi ◽  
Isao Nakanishi ◽  
Yoshio Oda

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