mrna hybridization
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2021 ◽  
Vol 12 ◽  
Author(s):  
Adimoolam Aruna ◽  
Tsan-Ping Wang ◽  
Jyun-Cing Cao ◽  
Dan-Suei Lan ◽  
Ganesan Nagarajan ◽  
...  

The local gill production of corticotropin releasing hormone (crh) and crh-receptor (crhr) is hypothesized to play important roles during seawater (SW) and freshwater (FW) acclimation in euryhaline black porgy (Acanthopagrus schlegelii). The mRNA expression of crh, crhr, and Na+/K+-ATPase (a-nka) was examined in SW and FW diencephalon (Dien) and in the gills at different exposure time by Q-PCR analysis. The in situ hybridization results indicate that crh mRNA hybridization signals were more abundant in FW fish in the gigantocellular (PMgc) and parvocellular (PMpc) part of the magnocellular preoptic nucleus versus SW fish. The crh and crhr-expressing cells were located in basal cells of gill filament. Furthermore, in vitro dexamethasone (DEX) treatment could increase the crh-system in the gill. Increased transcripts of the crh-system in the gill via in vitro and in vivo CRH treatments suggest that CRH may regulate the system in a local manner. The a-Nka cells were localized in the filament and secondary lamellae mitochondria rich cells (MRCs) of FW fish at 8 h and 1 day. a-Nka cells were seen in both filament and lamellae in the FW but much less in SW fish indicating that gills play key roles in black porgy osmoregulation. Gill crh and crhr play important roles in the response to salinity stress.


eLife ◽  
2020 ◽  
Vol 9 ◽  
Author(s):  
Nora Yucel ◽  
Jessie Axsom ◽  
Yifan Yang ◽  
Li Li ◽  
Joshua H Rhoades ◽  
...  

Endothelial cells (ECs) are widely heterogenous depending on tissue and vascular localization. Jambusaria et al. recently demonstrated that ECs in various tissues surprisingly possess mRNA signatures of their underlying parenchyma. The mechanism underlying this observation remains unexplained, and could include mRNA contamination during cell isolation, in vivo mRNA paracrine transfer from parenchymal cells to ECs, or cell-autonomous expression of these mRNAs in ECs. Here, we use a combination of bulk RNASeq, single-cell RNASeq datasets, in situ mRNA hybridization, and most importantly ATAC-Seq of FACS-isolated nuclei, to show that cardiac ECs actively express cardiomyocyte myofibril (CMF) genes and have open chromatin at CMF gene promoters. These open chromatin sites are enriched for sites targeted by cardiac transcription factors, and closed upon expansion of ECs in culture. Together, these data demonstrate unambiguously that the expression of CMF genes in ECs is cell-autonomous, and not simply a result of technical contamination or paracrine transfers of mRNAs, and indicate that local cues in the heart in vivo unexpectedly maintain fully open chromatin in ECs at genes previously thought limited to cardiomyocytes.


2014 ◽  
Vol 117 (11) ◽  
pp. 1262-1277 ◽  
Author(s):  
Anna Tetievsky ◽  
Miri Assayag ◽  
Rotem Ben-Hamo ◽  
Sol Efroni ◽  
Gal Cohen ◽  
...  

Faster reinduction of heat acclimation (AC) after its decline indicates “AC memory.” Our previous results revealed involvement of epigenetic mechanisms of transcriptional regulation. We hypothesized that the decline of AC (DeAC) is a period of “dormant memory” during which many processes are alerted to enable rapid reacclimation (ReAC). Using a genomewide approach we studied the AC, DeAC, and ReAC transcriptomes, to uncover hallmark pathways linked to “molecular memory” in the cardioacclimatome. Fifty rats subjected to heat acclimation [34°C for 2d (AC2d) or 30d (AC30)], DeAC (24°C, 30 days), ReAC (34°C, 2 days), and untreated controls were used. The GeneChip Rat Gene 1.0 ST Array was employed for left ventricular (cardiac) mRNA hybridization. Three independent bioinformatic analyses showed that 1) during AC2d enrichment of DNA impair/repair-linked genes is seen, and this is the molecular on-switch of acclimation; 2) genes activated in AC30 underlie the qualitative physiological adaptations of cardiac performance; 3) particular molecular programs encompassing constitutive upregulation of p38 MAPK, Jak/Stat, and Akt pathways and targets are specifically activated during DeAC and ReAC; and 4) epigenetic markers such as linker histones (histones H1 cluster), associated with nucleosome spacing, transcriptional chromatin modifiers, poly-(ADP-ribose) polymerase-1 (PARP1) linked to chromatin compaction, and microRNAs are only altered during DeAC/ReAC. The latter are newcomers to the AC/DeAC puzzle. We suggest that these transcriptional responses maintain euchromatin and proteostasis and enable faster physiological recovery upon ReAC by rapidly reestablishing the protected acclimated cardiophenotype. We propose that the cardiac AC model can be applied to acclimation processes in general.


2014 ◽  
Vol 25 (9) ◽  
pp. 1697-1708 ◽  
Author(s):  
Mahesh V. Sonar ◽  
Matthew E. Wampole ◽  
Yuan-Yuan Jin ◽  
Chang-Po Chen ◽  
Mathew L. Thakur ◽  
...  

Author(s):  
Robert Lea ◽  
Boyan Bonev ◽  
Eamon Dubaissi ◽  
Peter D. Vize ◽  
Nancy Papalopulu

Plant Methods ◽  
2010 ◽  
Vol 6 (1) ◽  
pp. 7 ◽  
Author(s):  
Jaana Vuosku ◽  
Suvi Sutela ◽  
Mira Sääskilahti ◽  
Johanna Kestilä ◽  
Anne Jokela ◽  
...  

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