Universal Nonlinear Spiking Neural P Systems with Delays and Weights on Synapses

The nonlinear spiking neural P systems (NSNP systems) are new types of computation models, in which the state of neurons is represented by real numbers, and nonlinear spiking rules handle the neuron’s firing. In this work, in order to improve computing performance, the weights and delays are introduced to the NSNP system, and universal nonlinear spiking neural P systems with delays and weights on synapses (NSNP-DW) are proposed. Weights are treated as multiplicative constants by which the number of spikes is increased when transiting across synapses, and delays take into account the speed at which the synapses between neurons transmit information. As a distributed parallel computing model, the Turing universality of the NSNP-DW system as number generating and accepting devices is proven. 47 and 43 neurons are sufficient for constructing two small universal NSNP-DW systems. The NSNP-DW system solving the Subset Sum problem is also presented in this work.

Novel Numerical Spiking Neural P Systems with a Variable Consumption Strategy

A novel variant of NSN P systems, called numerical spiking neural P systems with a variable consumption strategy (NSNVC P systems), is proposed. Like the spiking rules consuming spikes in spiking neural P systems, NSNVC P systems introduce a variable consumption strategy by modifying the form of the production functions used in NSN P systems. Similar to the delay feature of the spiking rules, NSNVC P systems introduce a postponement feature into the production functions. The execution of the production functions in NSNVC P systems is controlled by two, i.e., polarization and threshold, conditions. Multiple synaptic channels are used to transmit the charges and the production values in NSNVC P systems. The proposed NSNVC P systems are a type of distributed parallel computing models with a directed graphical structure. The Turing universality of the proposed NSNVC P systems is proved as number generating/accepting devices. Detailed descriptions are provided for NSNVC P systems as number generating/accepting devices. In addition, a universal NSNVC P system with 66 neurons is constructed as a function computing device.

Turing Universality of Weighted Spiking Neural P Systems with Anti-spikes

Weighted spiking neural P systems with anti-spikes (AWSN P systems) are proposed by adding anti-spikes to spiking neural P systems with weighted synapses. Anti-spikes behave like spikes of inhibition of communication between neurons. Both spikes and anti-spikes are used in the rule expressions. An illustrative example is given to show the working process of the proposed AWSN P systems. The Turing universality of the proposed P systems as number generating and accepting devices is proved. Finally, a universal AWSN P system having 34 neurons is proved to work as a function computing device by using standard rules, and one having 30 neurons is proved to work as a number generator.

Spiking Neural P Systems with Extended Channel Rules

This paper discusses a new variant of spiking neural P systems (in short, SNP systems), spiking neural P systems with extended channel rules (in short, SNP–ECR systems). SNP–ECR systems are a class of distributed parallel computing models. In SNP–ECR systems, a new type of spiking rule is introduced, called ECR. With an ECR, a neuron can send the different numbers of spikes to its subsequent neurons. Therefore, SNP–ECR systems can provide a stronger firing control mechanism compared with SNP systems and the variant with multiple channels. We discuss the Turing universality of SNP–ECR systems. It is proven that SNP–ECR systems as number generating/accepting devices are Turing universal. Moreover, we provide a small universal SNP–ECR system as function computing devices.

Simplified and Yet Turing Universal Spiking Neural P Systems with Communication on Request

Spiking neural P systems are a class of third generation neural networks belonging to the framework of membrane computing. Spiking neural P systems with communication on request (SNQ P systems) are a type of spiking neural P system where the spikes are requested from neighboring neurons. SNQ P systems have previously been proved to be universal (computationally equivalent to Turing machines) when two types of spikes are considered. This paper studies a simplified version of SNQ P systems, i.e. SNQ P systems with one type of spike. It is proved that one type of spike is enough to guarantee the Turing universality of SNQ P systems. Theoretical results are shown in the cases of the SNQ P system used in both generating and accepting modes. Furthermore, the influence of the number of unbounded neurons (the number of spikes in a neuron is not bounded) on the computation power of SNQ P systems with one type of spike is investigated. It is found that SNQ P systems functioning as number generating devices with one type of spike and four unbounded neurons are Turing universal.

Intrinsic universality and the computational power of self-assembly

Molecular self-assembly, the formation of large structures by small pieces of matter sticking together according to simple local interactions, is a ubiquitous phenomenon. A challenging engineering goal is to design a few molecules so that large numbers of them can self-assemble into desired complicated target objects. Indeed, we would like to understand the ultimate capabilities and limitations of this bottom-up fabrication process. We look to theoretical models of algorithmic self-assembly, where small square tiles stick together according to simple local rules in order to carry out a crystal growth process. In this survey, we focus on the use of simulation between such models to classify and separate their computational and expressive powers. Roughly speaking, one model simulates another if they grow the same structures, via the same dynamical growth processes. Our journey begins with the result that there is a single intrinsically universal tile set that, with appropriate initialization and spatial scaling, simulates any instance of Winfree's abstract Tile Assembly Model. This universal tile set exhibits something stronger than Turing universality: it captures the geometry and dynamics of any simulated system in a very direct way. From there we find that there is no such tile set in the more restrictive non-cooperative model, proving it weaker than the full Tile Assembly Model. In the two-handed model, where large structures can bind together in one step, we encounter an infinite set of infinite hierarchies of strictly increasing simulation power. Towards the end of our trip, we find one tile to rule them all: a single rotatable flipable polygonal tile that simulates any tile assembly system. We find another tile that aperiodically tiles the plane (but with small gaps). These and other recent results show that simulation is giving rise to a kind of computational complexity theory for self-assembly. It seems this could be the beginning of a much longer journey, so directions for future work are suggested.

Turing universality of the Biochemical Ground Form

We explore the expressive power of languages that naturally model biochemical interactions relative to languages that only naturally model basic chemical reactions, identifying molecular association as the basic mechanism that distinguishes the former from the latter. We use a process algebra, the Biochemical Ground Form (BGF), that adds primitives for molecular association to CGF, which is a process algebra that has been proved to be equivalent to the traditional notations for describing basic chemical reactions. We first observe that, unlike CGF, BGF is Turing universal as it supports a finite precise encoding of Random Access Machines, which comprise a well-known Turing powerful formalism. Then we prove that the Turing universality of BGF derives from the interplay between the molecular primitives of association and dissociation. In fact, the elimination from BGF of the primitives already present in CGF does not reduce the computational strength of the process algebra, but if either association or dissociation is removed, BGF ceases to be Turing complete.