Effects of foraging site distances on the intestinal bacterial community compositions of the sympatric wintering Hooded Crane (Grus monacha) and Domestic Duck (Anas platyrhynchos domesticus)

Background The composition of intestinal microflora in animals is affected by cross-species transmission. In a nature reserve, the foraging sites of waterbirds are relatively fixed, but frequently close to residential areas and can also be visited by domestic fowls. It is easy to result in the trans-species-flock dispersal of gut microbes between the wild birds and domestic fowls. The effects of the variable foraging site distances on the gut microbe structures of the waterbirds and the sympatric domestic fowls are currently unclear, and further research is required to evaluate the impacts of geographic location on cross-infection. Methods Illumina high-throughput sequencing and bioinformatics analysis software were utilized to compare and analyze the composition of gut microbes from the fecal samples of Hooded Cranes (HC; Grus monacha) and two groups of Domestic Ducks (Anas platyrhynchos domesticus) that foraged at 1 km (ducks in near areas, D-N), and 4 km (ducks in far areas, D-F) away from the habitats of the Hooded Cranes at Shengjin Lake, China. Results The results showed that there were significant differences in the alpha-diversity of the gut bacteria in the HC, D-N, and D-F samples under the interspecific distance factor. The dominant bacterial phyla, Cyanobacteria and Proteobacteria, showed correlations with distance for each host. The D-N group had more diverse intestinal flora than the D-F, as they were physically closer to the HC and had more indirect contact and cross-transmission of their gut microbes. More potentially pathogenic bacterial sequences, and Operational Taxonomic Units (OTUs) were found in the D-N than in HC and D-F. Conclusions Hooded Cranes and the Domestic Duck populations at variable distances from the cranes showed significant differences in their intestinal bacteria and potentially pathogenic bacteria. The closer the foraging sites were, the easier the intestinal flora spread across species. The results provide a basis for determining the safe distance between wild birds and domestic fowls in a nature reserve.

Seasonal Variations in the Gut Fungal Communities of Hooded Crane (Grus monacha) at Wintering and Stopover Sites in China

The “gut fungal microbiome” maintains the immune system, homeostasis, and various physiological functions of an organism. Different factors shape and affect gut fungal diversity and community composition, such as environment, habitat type, food resources, and seasons during migration. Wild birds amid migration are exposed to different habitats with different environments, available food resources, and seasons, which may substantially impact their gut fungal community composition and diversity. The hooded crane (Grus monacha) is a known migratory bird that migrates over long distances and is exposed to varied habitats with different environments and food types. We investigated the differences in gut fungal diversity and community composition between wintering and stopover sites amid three migratory seasons. We deduced the gut fungal pathogenic diversity and community composition during winter, fall, and spring by using high throughput sequencing (Illumina Mi-seq), and the internal transcribed region 2 (ITS2) was examined. Samples were collected from Shengjin Lake in the winter and Lindian during the fall and spring. The dominant fungal phyla found across the three seasons were Ascomycota, Basidiomycota, Zygomycota, and Rozellomycota. The gut fungal alpha diversity showed significant shifts during winter at the wintering site compared with the fall and spring seasons at the stopover site. The fungal community composition exhibited a significant change across the three seasons (ANOSIM p = 0.001). The results also demonstrated that the diversity and relative abundance of potential pathogens also showed divergence in winter compared to fall and spring. This study provides the basis for understanding the discrepancy in gut fungal diversity and community composition during migratory seasons at both wintering and stopover grounds. It also suggests that conservation measures should be applied to the conservation of hooded cranes and other wild birds, as the risk of cross-infection increases during seasonal migration.

Effects of Food Changes on Intestinal Bacterial Diversity of Wintering Hooded Cranes (Grus monacha)

As food is recognised as an important factor affecting the intestinal microbiota, seasonal changes in diet can influence the community composition. The hooded crane (Grus monacha) is an endangered migratory waterbird species, with some of the population wintering in the sallow lakes in the middle and lower Yangtze River floodplain. Their food resources have changed seasonally, with a reduction resulting from wetland degradation. To cope with seasonal changes in food availability, hooded cranes must constantly adjust their foraging strategies to survive. We studied the effect of changes in diet on the intestinal bacterial diversity of hooded cranes at Shengjin Lake, using faecal microanalysis and high-throughput sequencing. The results show that the main foods of hooded cranes were Polygonum criopolitanum, Oryza sativa, and Carex spp., which were significantly related to the composition of the intestinal bacterial community. In addition, foods available from the similar habitats were more similar, and the corresponding hooded crane intestinal bacteria were also more similar. The relative abundance of Lactobacillus acidipiscis in January and March was significantly higher than in November. Our research shows that the intestinal bacteria of hooded cranes actively adapt to diet changes to overcome the negative impact of the reduction in food resources, which is vital to the survival of hooded cranes.

Significant Differences in the Gut Bacterial Communities of Hooded Crane (Grus monacha) in Different Seasons at a Stopover Site on the Flyway

Intestinal bacterial communities form an integral component of the organism. Many factors influence gut bacterial community composition and diversity, including diet, environment and seasonality. During seasonal migration, birds use many habitats and food resources, which may influence their intestinal bacterial community structure. Hooded crane (Grus monacha) is a migrant waterbird that traverses long distances and occupies varied habitats. In this study, we investigated the diversity and differences in intestinal bacterial communities of hooded cranes over the migratory seasons. Fecal samples from hooded cranes were collected at a stopover site in two seasons (spring and fall) in Lindian, China, and at a wintering ground in Shengjin Lake, China. We analyzed bacterial communities from the fecal samples using high throughput sequencing (Illumina Mi-seq). Firmicutes, Proteobacteria, Tenericutes, Cyanobacteria, and Actinobacteria were the dominant phyla across all samples. The intestinal bacterial alpha-diversity of hooded cranes in winter was significantly higher than in fall and spring. The bacterial community composition significantly differed across the three seasons (ANOSIM, P = 0.001), suggesting that seasonal fluctuations may regulate the gut bacterial community composition of migratory birds. This study provides baseline information on the seasonal dynamics of intestinal bacterial community structure in migratory hooded cranes.

Flexible Foraging Response of Wintering Hooded Cranes (Grus monacha) to Food Availability in the Lakes of the Yangtze River Floodplain, China

Wetlands are disappearing or degrading at an unprecedented rate due to the increase in human encroachment and disturbance, eventually leading to habitat loss for waterbirds, which is the primary cause of the decline in the Hooded Crane (Grus monacha) population. The Hooded Cranes have to constantly adjust their foraging strategies to survive to cope with this situation. In order to study how cranes respond to food resources in mosaic habitat, we surveyed a total of 420 food quadrats and 736 behavioral samples from three habitats during three wintering periods in Shengjin Lake and Caizi Lake. We measured temporal and between-habitat differences in foraging time budget, foraging frequency, and foraging success rate. Akaike’s information criterion was selected between the models of food abundance and availability. The results indicated that the wintering cranes spent the majority of their time (66.55%) foraging and shifted their foraging behaviors based upon food abundance and availability in different habitats. Our analyses also indicated that cranes were willing to forage more food with poor sediment penetrability in sub-optimal habitats. Foraging time budget was based on the food depth, and the foraging frequency and foraging success rate were based on food abundance. Cranes adopted flexible foraging strategies in response to the alternative food resources in mosaic wetland habitats, as it could mitigate the negative impacts of habitat loss and facilitate survival.

Do Geese Facilitate or Compete with Wintering Hooded Cranes (Grus monacha) for Forage Resources?

Foraging is the key behavior of waterbirds, which profoundly affects the survival of their population, and it is affected by interspecific interaction. At Shengjin Lake in China, owing to the reduced availability of suitable habitats for a large population of migratory waterbirds (especially wild geese) over winter, mixed species foraging inevitably occurs. This study aimed to investigate whether mixed-species foraging affects the foraging of hooded cranes (Grus monacha). Fields surveys were carried out at Shengjin Lake from November 2018 to March 2019. Mixed-species foraging was surveyed between the flocks of hooded cranes and three species of geese, greater white-fronted geese (Anser albifrons), lesser white-fronted geese (Anser erythropus) and bean geese (Anser fabalis). Instantaneous scanning and focal animal methods were used to collect behavioral samples of hooded cranes. The quadrat method was used to survey the food density in three habitats: meadows, mudflats, and paddy fields. The results showed that the foraging success rate of hooded cranes was not significantly correlated with food density and the relative flock size in the mixed-species foraging flock in meadows, but a significant negative correlation with the relative flock size in mudflats. However in paddy fields it was a significant positive correlation with the relative flock size. Foraging efforts of hooded cranes were negatively correlated with food density and positively correlated with the relative flock size in meadows. In mudflats, foraging efforts of hooded cranes had a significant positively correlation with the relative flock size, however, there was a significant negative correlation with the relative flock size in paddy fields. To sum up, larger numbers of geese mixed with hooded cranes has a favorable effect on the foraging of hooded cranes in meadows and mudflats, however, the reverse was observed in the paddy fields.