Robust Helix Formation in a New Family of Oligoureas Based on a Constrained Bicyclic Building Block

A new family of 7,7′-diazaisoindigo is presented. Theoretical calculations and photophysical studies demonstrate that it could be a good candidate for organic electronics.

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DNA Functionality with Photoswitchable Hydrazone Cytidine

10.26434/chemrxiv.13198211 ◽

2020 ◽

Author(s):

Song Mao ◽

Zhihua Chang ◽

Ya Ying Zheng ◽

Alexander Shekhtman ◽

Jia Sheng

Keyword(s):

Dna Synthesis ◽

Blue Light ◽

Building Block ◽

Dna Oligonucleotides ◽

New Family ◽

Extension Model ◽

Dna Strands ◽

Functional Dna ◽

Dna Strand ◽

Intramolecular Hydrogen

A new family of hydrazone modified cytidine phosphoramidite building block was synthesized and incorporated into DNA oligonucleotides to construct photoswitchable DNA strands. The E-Z isomerization triggered by the irradiation of blue light with a wavelength of 450 nm was investigated and confirmed by 1H NMR and HPLC in the contexts of both nucleoside and DNA oligonucleotide. The light activated Z form isomer of this hydrazone-cytidine with a six-member intramolecular hydrogen bond was found to inhibit DNA synthesis in the primer extension model by using Bst DNA polymerase. In addition, the hydrazone modification caused the misincorporation of dATP together with dGTP into the growing DNA strand with similar selectivity, highlighting the potential G to A mutation. This work provides a novel functional DNA building block and an additional molecular tool that have potential chemical biology and bio-medicinal applications to control DNA synthesis and DNA-enzyme interactions using cell friendly blue light irradiation.

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Synthesis of a Novel Zn-Salphen Building Block and Its Acrylic Terpolymer Counterparts as Tunable Supramolecular Recognition Systems

Molecules ◽

10.3390/molecules24122245 ◽

2019 ◽

Vol 24 (12) ◽

pp. 2245 ◽

Cited By ~ 2

Author(s):

Gustavo A. Zelada-Guillén ◽

Ana B. Cuéllar-Sánchez ◽

Margarita Romero-Ávila ◽

Martha V. Escárcega-Bobadilla

Keyword(s):

Building Block ◽

Modular Design ◽

Aqueous Media ◽

Proof Of Concept ◽

New Family ◽

Starting Point ◽

Potentiometric Measurements ◽

Methyl Metacrylate ◽

Recognition Systems ◽

Synthetic Approaches

In this work, we present the synthesis of a novel Zn-Salphen complex containing an allyl group, which was used as building block in the further preparation of a new family of functional terpolymers. These polymers were obtained through radical co-polymerization with methyl metacrylate (MMA) and n-butyl acrylate (nBuA) in different ratios. The supramolecular recognition behavior of each polymer was evaluated via potentiometric measurements against selected anions in aqueous media. Interestingly, this proof of concept study shows that these systems were selective against only fluoride (F−) or both, fluoride and acetate (OAc−), by tailoring the relative content of Zn-Salphen monomer, thus making them a promising starting point for modular design of chemical sensors through straightforward synthetic approaches.

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DNA Functionality with Photoswitchable Hydrazone Cytidine

10.26434/chemrxiv.13198211.v1 ◽

2020 ◽

Author(s):

Song Mao ◽

Zhihua Chang ◽

Ya Ying Zheng ◽

Alexander Shekhtman ◽

Jia Sheng

Keyword(s):

Dna Synthesis ◽

Blue Light ◽

Building Block ◽

Dna Oligonucleotides ◽

New Family ◽

Extension Model ◽

Dna Strands ◽

Functional Dna ◽

Dna Strand ◽

Intramolecular Hydrogen

A new family of hydrazone modified cytidine phosphoramidite building block was synthesized and incorporated into DNA oligonucleotides to construct photoswitchable DNA strands. The E-Z isomerization triggered by the irradiation of blue light with a wavelength of 450 nm was investigated and confirmed by 1H NMR and HPLC in the contexts of both nucleoside and DNA oligonucleotide. The light activated Z form isomer of this hydrazone-cytidine with a six-member intramolecular hydrogen bond was found to inhibit DNA synthesis in the primer extension model by using Bst DNA polymerase. In addition, the hydrazone modification caused the misincorporation of dATP together with dGTP into the growing DNA strand with similar selectivity, highlighting the potential G to A mutation. This work provides a novel functional DNA building block and an additional molecular tool that have potential chemical biology and bio-medicinal applications to control DNA synthesis and DNA-enzyme interactions using cell friendly blue light irradiation.

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Microstructure and crystal symmetry of Pb2Sr2(Y/Ca)Cu3O9−δ

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100173455 ◽

1990 ◽

Vol 48 (4) ◽

pp. 64-65

Author(s):

Y. P. Lin ◽

J. S. Xue ◽

J. E. Greedan

Keyword(s):

Electron Diffraction ◽

High Temperature Superconductors ◽

Carbon Film ◽

Basic Structure ◽

Crystal Symmetry ◽

X Ray Diffraction ◽

X Ray ◽

Space Groups ◽

New Family ◽

Convergent Beam

A new family of high temperature superconductors based on Pb2Sr2YCu3O9−δ has recently been reported. One method of improving Tc has been to replace Y partially with Ca. Although the basic structure of this type of superconductors is known, the detailed structure is still unclear, and various space groups has been proposed. In our work, crystals of Pb2Sr2YCu3O9−δ with dimensions up to 1 × 1 × 0.25.mm and with Tc of 84 K have been grown and their superconducting properties described. The defects and crystal symmetry have been investigated using electron microscopy performed on crushed crystals supported on a holey carbon film.Electron diffraction confirmed x-ray diffraction results which showed that the crystals are primitive orthorhombic with a=0.5383, b=0.5423 and c=1.5765 nm. Convergent Beam Electron Diffraction (CBED) patterns for the and axes are shown in Figs. 1 and 2 respectively.

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A new family of fluorescent calcium indicators designed to resist leakage or for measuring calcium near membranes

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100168578 ◽

1994 ◽

Vol 52 ◽

pp. 168-169

Author(s):

Martin Poenie ◽

Akwasi Minta ◽

Charles Vorndran

Keyword(s):

Metal Binding ◽

Acetoxymethyl Ester ◽

Binding Properties ◽

Fura 2 ◽

New Family ◽

Anion Transporter ◽

Calcium Indicator ◽

Calcium Indicators ◽

High Calcium ◽

Intracellular Compartmentalization

The use of fura-2 as an intracellular calcium indicator is complicated by problems of rapid dye leakage and intracellular compartmentalization which is due to a probenecid sensitive anion transporter. In addition there is increasing evidence for localized microdomains of high calcium signals which may not be faithfully reported by fura-2.We have developed a new family of fura-2 analogs aimed at addressing some of these problems. These new indicators are based on a modified bapta which can be readily derivatized to produce fura-2 analogs with a variety of new properties. The modifications do not affect the chromophore and have little impact on the spectral and metal binding properties of the indicator. One of these new derivatives known as FPE3 is a zwitterionic analog of fura-2 that can be loaded into cells as an acetoxymethyl ester and whose retention in cells is much improved. The improved retention of FPE3 is important for both cuvettebased measurements of cell suspensions and for calcium imaging.

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Scanning tunneling microscopy and atomic force microscopy: New tools for biology

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100155864 ◽

1989 ◽

Vol 47 ◽

pp. 778-779

Author(s):

CE Bracker ◽

P. K. Hansma

Keyword(s):

Physical Property ◽

Scanning Probe ◽

Scanning Tunneling ◽

Small Scale ◽

Tunneling Microscopy ◽

Force Microscopy ◽

New Family ◽

Small Probe ◽

Atomic Force ◽

Transmission Electron

A new family of scanning probe microscopes has emerged that is opening new horizons for investigating the fine structure of matter. The earliest and best known of these instruments is the scanning tunneling microscope (STM). First published in 1982, the STM earned the 1986 Nobel Prize in Physics for two of its inventors, G. Binnig and H. Rohrer. They shared the prize with E. Ruska for his work that had led to the development of the transmission electron microscope half a century earlier. It seems appropriate that the award embodied this particular blend of the old and the new because it demonstrated to the world a long overdue respect for the enormous contributions electron microscopy has made to the understanding of matter, and at the same time it signalled the dawn of a new age in microscopy. What we are seeing is a revolution in microscopy and a redefinition of the concept of a microscope.Several kinds of scanning probe microscopes now exist, and the number is increasing. What they share in common is a small probe that is scanned over the surface of a specimen and measures a physical property on a very small scale, at or near the surface. Scanning probes can measure temperature, magnetic fields, tunneling currents, voltage, force, and ion currents, among others.

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