Complete genome sequencing and comparative genome analysis of the extremely halophilic archaea, Haloterrigena daqingensis

2021 ◽  
Author(s):  
Shuang Wang ◽  
Manik Prabhu Narsing Rao ◽  
Dan Wei ◽  
Lei Sun ◽  
Bao‐Zhu Fang ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Genome Analysis ◽  
Complete Genome ◽  
Halophilic Archaea ◽  
Comparative Genome Analysis ◽  
Comparative Genome ◽  
Complete Genome Sequencing ◽  
Extremely Halophilic Archaea

scholarly journals Complete Genome Sequence of the Giant Virus OBP and Comparative Genome Analysis of the Diverse  KZ-Related Phages

2011 ◽  
Vol 86 (3) ◽  
pp. 1844-1852 ◽  
Author(s):  
A. Cornelissen ◽  
S. C. Hardies ◽  
O. V. Shaburova ◽  
V. N. Krylov ◽  
W. Mattheus ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Analysis ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Giant Virus ◽  
Comparative Genome Analysis ◽  
Comparative Genome

Complete genome sequence and comparative genome analysis of the Paenibacillus mucilaginosus K02

2016 ◽  
Vol 93 ◽  
pp. 194-203 ◽  
Author(s):  
Bo Xiao ◽  
Yu-Fang Sun ◽  
Bin Lian ◽  
Tian-Ming Chen
Keyword(s):  
Genome Sequence ◽  
Genome Analysis ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Comparative Genome Analysis ◽  
Comparative Genome ◽  
Paenibacillus Mucilaginosus

Complete genome sequence and comparative genome analysis of Streptococcus parauberis KCTC11980

2015 ◽  
Vol 37 (11) ◽  
pp. 959-968
Author(s):  
Jung Soo Seo ◽  
Mun Gyeong Kwon ◽  
Jee Youn Hwang ◽  
Sung Hee Jung ◽  
Hyun Ja Han ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Analysis ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Comparative Genome Analysis ◽  
Comparative Genome ◽  
Streptococcus Parauberis

scholarly journals Complete Genome Sequence of a High Lipid-Producing Strain of Mucor circinelloides WJ11 and Comparative Genome Analysis with a Low Lipid-Producing Strain CBS 277.49

PLoS ONE ◽  
2015 ◽  
Vol 10 (9) ◽  
pp. e0137543 ◽  
Author(s):  
Xin Tang ◽  
Lina Zhao ◽  
Haiqin Chen ◽  
Yong Q. Chen ◽  
Wei Chen ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Analysis ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Mucor Circinelloides ◽  
Comparative Genome Analysis ◽  
Comparative Genome ◽  
High Lipid

Comparative genome analysis and characterization of theSalmonellaTyphimurium strain CCRJ_26 isolated from swine carcasses using whole-genome sequencing approach

2018 ◽  
Vol 66 (4) ◽  
pp. 352-359 ◽  
Author(s):  
P.H.N. Panzenhagen ◽  
C.C. Cabral ◽  
P.N. Suffys ◽  
R.M. Franco ◽  
D.P. Rodrigues ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Analysis ◽  
Whole Genome ◽  
Comparative Genome Analysis ◽  
Comparative Genome

scholarly journals Comparative Genome Analysis of a Pathogenic Erysipelothrix rhusiopathiae Isolate WH13013 from Pig Reveals Potential Genes Involve in Bacterial Adaptions and Pathogenesis

2020 ◽  
Vol 7 (2) ◽  
pp. 74
Author(s):  
Longsheng Yang ◽  
Yongwei Zhu ◽  
Zhong Peng ◽  
Yi Ding ◽  
Kai Jie ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Analysis ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Erysipelothrix Rhusiopathiae ◽  
Comparative Genome Analysis ◽  
Circular Chromosome ◽  
Comparative Genome ◽  
Virulent Strains ◽  
Core Genes

Erysipelothrix rhusiopathiae is a common pathogen responsible for pig erysipelas. However, the molecular basis for the pathogenesis of E. rhusiopathiae remains to be elucidated. In this study, the complete genome sequence of the E. rhusiopathiae strain WH13013, a pathogenic isolate from a diseased pig, was generated using a combined strategy of PacBio RSII and Illumina sequencing technologies. The strategy finally generated a single circular chromosome of approximately 1.78 Mb in size for the complete genome of WH13013, with an average GC content of 36.49%. The genome of WH13013 encoded 1633 predicted proteins, 55 tRNAs, as well as 15 rRNAs. It contained four genomic islands and several resistance-associated genes were identified within these islands. Phylogenetic analysis revealed that WH13013 was close to many other sequenced E. rhusiopathiae virulent strains. The comprehensive comparative analysis of eight E. rhusiopathiae virulent strains, including WH13013, identified a total of 1184 core genes. A large proportion (approximately 75.31%) of these core genes participated in nutrition and energy uptake and metabolism as well as the other bioactivities that are necessary for bacterial survival and adaption. The core genes also contained those encoding proteins participating in the biosynthesis and/or the components of the proposed virulence factors of E. rhusiopathiae, including the capsule (cpsA, cpsB, cpsC), neuraminidase (nanH), hyaluronidase (hylA, hylB, hylC), and surface proteins (spaA, rspA, rspB). The obtaining of the complete genome sequence of this virulent strain, WH13013, and this comprehensive comparative genome analysis will help in further studies of the genetic basis of the pathogenesis of E. rhusiopathiae.

scholarly journals Complete Genome and Comparative Genome Analysis of Lactobacillus reuteri YSJL-12, a Potential Probiotics Strain Isolated From Healthy Sow Fresh Feces

2020 ◽  
Vol 16 ◽  
pp. 117693432094219
Author(s):  
Su Xu ◽  
Jianjun Cheng ◽  
Xiangchen Meng ◽  
Yan Xu ◽  
Ying Mu
Keyword(s):  
Genome Analysis ◽  
Complete Genome ◽  
Genetic Basis ◽  
Lactobacillus Reuteri ◽  
Orthologous Gene ◽  
Gene Clusters ◽  
Orthologous Group ◽  
Comparative Genome Analysis ◽  
Comparative Genome ◽  
Fresh Feces

Lactobacillus reuteri YSJL-12 was isolated from healthy sow fresh feces and used as probiotics additives previously. To investigate the genetic basis on probiotic potential and identify the genes in the strain, the complete genome of YSJL-12 was sequenced. Then comparative genome analysis on 9 strains of Lactobacillus reuteri was performed. The genome of YSJL-12 consisted of a circular 2,084,748 bp chromosome and 2 circular plasmids (51,906 and 15,134 bp). From among the 2065 protein-coding sequences (CDSs), the genes resistant to the environmental stress were identified. The function of COG (Clusters of Orthologous Group) protein genes was predicted, and the KEGG (Kyoto Encyclopedia of Genes and Genomes) pathways were analyzed. The comparative genome analysis indicated that the pan-genome contained a core genome of 1257 orthologous gene clusters, an accessory genome of 1064 orthologous gene clusters, and 1148 strain-specific genes, and the antibacterial mechanism among Lactobacillus reuteri strains might be different. The phylogenetic analysis and genomic collinearity revealed that the phylogenetic relationship among 9 strains of Lactobacillus reuteri was connected with host species and showed host specificity. The research could help us to better predict genes function and understand genetic basis on adapting to host gut in Lactobacillus reuteri YSJL-12.

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