A comprehensive model for the diffusion and hybridization processes of nucleic acid probes in fluorescence in situ hybridization

Joana F. Lima; Paulo Maia; Beatriz T. Magalhães; Laura Cerqueira; Nuno F. Azevedo

doi:10.1002/bit.27462

A comprehensive model for the diffusion and hybridization processes of nucleic acid probes in fluorescence in situ hybridization

Biotechnology and Bioengineering ◽

10.1002/bit.27462 ◽

2020 ◽

Vol 117 (10) ◽

pp. 3212-3223

Author(s):

Joana F. Lima ◽

Paulo Maia ◽

Beatriz T. Magalhães ◽

Laura Cerqueira ◽

Nuno F. Azevedo

Keyword(s):

In Situ Hybridization ◽

Nucleic Acid ◽

Fluorescence In Situ Hybridization ◽

Comprehensive Model ◽

Nucleic Acid Probes

A comprehensive model for the diffusion and hybridization processes of nucleic acid probes in fluorescence in situ hybridization

Authorea ◽

10.22541/au.158359754.43977840 ◽

2020 ◽

Author(s):

Joana Lima ◽

Paulo Maia ◽

Beatriz Magalh es ◽

Laura Cerqueira ◽

Nuno Azevedo

Keyword(s):

In Situ Hybridization ◽

Nucleic Acid ◽

Fluorescence In Situ Hybridization ◽

Comprehensive Model ◽

Nucleic Acid Probes

Rapid Identification of Staphylococcus aureus in Blood Cultures by a Combination of Fluorescence In Situ Hybridization Using Peptide Nucleic Acid Probes and Flow Cytometry

Journal of Clinical Microbiology ◽

10.1128/jcm.43.9.4855-4857.2005 ◽

2005 ◽

Vol 43 (9) ◽

pp. 4855-4857 ◽

Cited By ~ 42

Author(s):

H. Hartmann ◽

H. Stender ◽

A. Schafer ◽

I. B. Autenrieth ◽

V. A. J. Kempf

Keyword(s):

Staphylococcus Aureus ◽

Flow Cytometry ◽

In Situ Hybridization ◽

Nucleic Acid ◽

Fluorescence In Situ Hybridization ◽

Peptide Nucleic Acid ◽

Rapid Identification ◽

Blood Cultures ◽

Nucleic Acid Probes

Direct Detection and Identification of African Trypanosomes by Fluorescence In Situ Hybridization with Peptide Nucleic Acid Probes

Journal of Clinical Microbiology ◽

10.1128/jcm.40.11.4295-4297.2002 ◽

2002 ◽

Vol 40 (11) ◽

pp. 4295-4297 ◽

Cited By ~ 30

Author(s):

M. Radwanska ◽

S. Magez ◽

H. Perry-O'Keefe ◽

H. Stender ◽

J. Coull ◽

...

Keyword(s):

In Situ Hybridization ◽

Nucleic Acid ◽

Fluorescence In Situ Hybridization ◽

Peptide Nucleic Acid ◽

Direct Detection ◽

Nucleic Acid Probes ◽

African Trypanosomes ◽

Detection And Identification

COBRA: combined binary ratio labeling of nucleic-acid probes for multi-color fluorescence in situ hybridization karyotyping

Nature Protocols ◽

10.1038/nprot.2006.41 ◽

2006 ◽

Vol 1 (1) ◽

pp. 264-275 ◽

Cited By ~ 50

Author(s):

Karoly Szuhai ◽

Hans J Tanke

Keyword(s):

In Situ Hybridization ◽

Nucleic Acid ◽

Fluorescence In Situ Hybridization ◽

Nucleic Acid Probes

Evaluation of Dual-Color Fluorescence In Situ Hybridization With Peptide Nucleic Acid Probes for the Detection of Mycobacterium tuberculosis and Non-Tuberculous Mycobacteria in Clinical Specimens

Annals of Laboratory Medicine ◽

10.3343/alm.2015.35.5.500 ◽

2015 ◽

Vol 35 (5) ◽

pp. 500-505 ◽

Cited By ~ 7

Author(s):

Namhee Kim ◽

Seung Hee Lee ◽

Jongyoun Yi ◽

Chulhun L. Chang

Keyword(s):

Mycobacterium Tuberculosis ◽

In Situ Hybridization ◽

Nucleic Acid ◽

Fluorescence In Situ Hybridization ◽

Peptide Nucleic Acid ◽

Nucleic Acid Probes ◽

Clinical Specimens ◽

Dual Color

Direct Identification of Major Blood Culture Pathogens, Including Pseudomonas aeruginosa and Escherichia coli, by a Panel of Fluorescence In Situ Hybridization Assays Using Peptide Nucleic Acid Probes

Journal of Clinical Microbiology ◽

10.1128/jcm.43.4.1947-1949.2005 ◽

2005 ◽

Vol 43 (4) ◽

pp. 1947-1949 ◽

Cited By ~ 35

Author(s):

M. Sogaard ◽

H. Stender ◽

H. C. Schonheyder

Keyword(s):

Escherichia Coli ◽

Pseudomonas Aeruginosa ◽

In Situ Hybridization ◽

Nucleic Acid ◽

Blood Culture ◽

Fluorescence In Situ Hybridization ◽

Peptide Nucleic Acid ◽

Direct Identification ◽

Nucleic Acid Probes

Detection of viable Yersinia pestis by fluorescence in situ hybridization using peptide nucleic acid probes

Journal of Microbiological Methods ◽

10.1016/j.mimet.2008.06.021 ◽

2008 ◽

Vol 75 (2) ◽

pp. 293-301 ◽

Cited By ~ 14

Author(s):

John H. Kenny ◽

Yan Zhou ◽

Martin E. Schriefer ◽

Scott W. Bearden

Keyword(s):

In Situ Hybridization ◽

Nucleic Acid ◽

Fluorescence In Situ Hybridization ◽

Yersinia Pestis ◽

Peptide Nucleic Acid ◽

Nucleic Acid Probes

LNA flow–FISH: A flow cytometry–fluorescence in situ hybridization method to detect messenger RNA using locked nucleic acid probes

Analytical Biochemistry ◽

10.1016/j.ab.2009.04.026 ◽

2009 ◽

Vol 390 (2) ◽

pp. 109-114 ◽

Cited By ~ 26

Author(s):

Kelly L. Robertson ◽

Dzung C. Thach

Keyword(s):

Flow Cytometry ◽

In Situ Hybridization ◽

Nucleic Acid ◽

Fluorescence In Situ Hybridization ◽

Messenger Rna ◽

Locked Nucleic Acid ◽

Hybridization Method ◽

Nucleic Acid Probes

Faculty Opinions recommendation of Fluorescence in situ hybridization with peptide nucleic acid probes for rapid identification of Candida albicans directly from blood culture bottles.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1007325.92108 ◽

2002 ◽

Author(s):

Sybren de Hoog

Keyword(s):

Candida Albicans ◽

In Situ Hybridization ◽

Nucleic Acid ◽

Blood Culture ◽

Fluorescence In Situ Hybridization ◽

Peptide Nucleic Acid ◽

Rapid Identification ◽

Nucleic Acid Probes

Unravelling the Bacterial Vaginosis-Associated Biofilm: A Multiplex Gardnerella vaginalis and Atopobium vaginae Fluorescence In Situ Hybridization Assay Using Peptide Nucleic Acid Probes

PLoS ONE ◽

10.1371/journal.pone.0136658 ◽

2015 ◽

Vol 10 (8) ◽

pp. e0136658 ◽

Cited By ~ 35

Author(s):

Liselotte Hardy ◽

Vicky Jespers ◽

Nassira Dahchour ◽

Lambert Mwambarangwe ◽

Viateur Musengamana ◽

...

Keyword(s):

In Situ Hybridization ◽

Nucleic Acid ◽

Bacterial Vaginosis ◽

Fluorescence In Situ Hybridization ◽

Peptide Nucleic Acid ◽

Hybridization Assay ◽

Gardnerella Vaginalis ◽

Nucleic Acid Probes ◽

Atopobium Vaginae