ChemInform Abstract: PHOTOELECTRON-DETERMINED CORE BINDING ENERGIES AND PREDICTED GAS-PHASE BASICITIES FOR THE 2-HYDROXYPYRIDINE ⇄ 2-PYRIDONE SYSTEM

1980 ◽  
Vol 11 (18) ◽  
Author(s):  
R. S. BROWN ◽  
A. TSE ◽  
J. C. VEDERAS
1980 ◽  
Vol 58 (7) ◽  
pp. 694-703 ◽  
Author(s):  
R. S. Brown ◽  
A. Tse

N1s binding energies for 36 pyridines substituted at the 2-, 3-, and 4-positions have been determined by X-ray photoelectron spectroscopy. The differences in BE relative to pyridine are analysed in terms of existing theoretical approaches (electrostatic, ground potential, and relaxation potential models) and compared with [Formula: see text] values calculated for analogous monosubstituted benzenes. One finds good correlations of [Formula: see text] with solution determined σ-substituent values although some substituent values deviate from the correlation probably due to solution effects which are not present in the gas phase. Correlations between [Formula: see text] and 14N nmr chemical shifts are poor, particularly for electron withdrawing substituents. The relationship between [Formula: see text] and gas phase basicity values (ΔG0) is good, and it appears as if the [Formula: see text] is more sensitive to the substituent than ΔG0. MINDO/3 calculations on the methoxypyridines and their conjugate acids employing full geometry optimizations are presented and analysed in order to determine the effect of geometric relaxation on the gas phase basicity.


1992 ◽  
Vol 21 (12) ◽  
pp. 2439-2442 ◽  
Author(s):  
Masaaki Mishima ◽  
Chul Hyun Kang ◽  
Mizue Fujio ◽  
Yuho Tsuno

2010 ◽  
Vol 88 (8) ◽  
pp. 759-768 ◽  
Author(s):  
Al Mokhtar Lamsabhi ◽  
Otilia Mó ◽  
Manuel Yáñez

The association of Ca2+ and Cu2+ to serine was investigated by means of B3LYP DFT calculations. The [serine–M]2+ (M = Ca, Cu) potential energy surfaces include, as does the neutral serine, a large number of conformers, in which a drastic reorganization of the electron density of the serine moiety is observed. This leads to significant changes in the number and strength of the intramolecular hydrogen bonds existing in the neutral serine tautomers. In some cases, a proton is transferred from the carboxylic OH group to the amino group and accordingly, some of the more stable [serine–M]2+ complexes can be viewed as the result of the interaction of the zwiterionic form of serine with the doubly charged metal ion. Whereas the interaction between Ca2+ and serine is essentially electrostatic, that between Cu2+ and serine has a non-negligible covalent character, reflected in larger electron densities at the bond critical points between the metal and the base, in the negative values of the electron density between the two interacting systems, and in much larger Cu2+ than Ca2+ binding energies. More importantly, the interaction with Cu2+ is followed by a partial oxidation of the base, which is not observed when the metal ion is Ca2+. The main consequence is that in Cu2+ complexes a significant acidity enhancement of the serine moiety takes place, which strongly favors the deprotonation of the [serine–Cu]2+ complexes. This is not the case for Ca2+ complexes. Thus, [serine–Ca]2+ complexes, like those formed by urea, thiourea, selenourea, or glycine, should be detected in the gas phase. Conversely, the complexes with Cu2+ should deprotonate spontaneously and therefore only [(serine–H)–Cu]+ monocations should be experimentally accessible.


2018 ◽  
Author(s):  
Steven Daly ◽  
Massimiliano Porrini ◽  
Frédéric Rosu ◽  
Valerie Gabelica

In solution, UV-vis spectroscopy is often used to investigate structural changes in biomolecules (i.e., nucleic acids), owing to changes in the environment of their chromophores (i.e., the nucleobases). Here we address whether action spectroscopy could achieve the same for gas-phase ions, while taking the advantage of additional mass spectrometry and ion mobility separation of complex mixtures. We therefore systematically studied the action spectroscopy of homo-base 6-mer DNA strands (dG6, dA6, dC6, dT6), and discuss the results in light of gas-phase structures validated by ion mobility spectrometry and infrared ion spectroscopy, and in light of electron binding energies measured by photoelectron spectroscopy, and calculated electronic photo-absorption spectra. When UV photons interact with oligonucleotide polyanions, two main actions may take place: (1) fragmentation and (2) electron detachment. The action spectra reconstructed from fragmentation follow the absorption spectra well, and result from multiple cycles of absorption and internal conversion. The action spectra reconstructed from the electron photodetachment (EPD) efficiency reveal interesting phenomena: EPD depends on the charge state in a manner depending on electron binding energies, and is particularly efficient for purines but not pyrimidines. EPD thus reflects not only absorption, but also particular relaxation pathways of the electronic excited states. As these pathways lead to photo-oxidation, their investigation on model gas-phase systems may prove useful to elucidate mechanisms of photo-oxidative damages, which are linked to mutations and cancers.


2019 ◽  
Vol 31 (1) ◽  
pp. 411-421
Author(s):  
Masoumeh Ghahremani ◽  
Hamed Bahrami ◽  
Hamed Douroudgari ◽  
Morteza Vahedpour

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