ChemInform Abstract: A New Era of the Vaginal Microbiome: Advances Using Next-Generation Sequencing

ChemInform ◽  
2012 ◽  
Vol 43 (31) ◽  
pp. no-no
Author(s):  
Jennifer M. Fettweis ◽  
Myrna G. Serrano ◽  
Philippe H. Girerd ◽  
Kimberly K. Jefferson ◽  
Gregory A. Buck
2012 ◽  
Vol 9 (5) ◽  
pp. 965-976 ◽  
Author(s):  
Jennifer M. Fettweis ◽  
Myrna G. Serrano ◽  
Philippe H. Girerd ◽  
Kimberly K. Jefferson ◽  
Gregory A. Buck

Cancers ◽  
2019 ◽  
Vol 11 (6) ◽  
pp. 742 ◽  
Author(s):  
Masayuki Takeda ◽  
Kazuko Sakai ◽  
Takayuki Takahama ◽  
Kazuya Fukuoka ◽  
Kazuhiko Nakagawa ◽  
...  

Recent progress in understanding the molecular basis of cancer—including the discovery of cancer-associated genes such as oncogenes and tumor suppressor genes—has suggested that cancer can become a treatable disease. The identification of driver oncogenes such as EGFR, ALK, ROS1, BRAF and HER2 has already been successfully translated into clinical practice for individuals with solid tumor. Next-generation sequencing (NGS) technologies have led to the ability to test for multiple cancer-related genes at once with a small amount of cells and tissues. In Japan, several hospitals have started NGS-based mutational profiling screening in patients with solid tumor in order to guide patients to relevant clinical trials. The Ministry of Health, Labor, and Welfare of Japan has also approved several cancer gene panels for use in clinical practice. However, there is an urgent need to develop a medical curriculum of clinical variant interpretation and reporting. We review recent progress in the implementation of NGS in Japan.


2011 ◽  
Vol 152 (2) ◽  
pp. 55-62 ◽  
Author(s):  
Zsuzsanna Mihály ◽  
Balázs Győrffy

In the past ten years the development of next generation sequencing technologies brought a new era in the field of quick and efficient DNA sequencing. In our study we give an overview of the methodological achievements from Sanger’s chain-termination sequencing in 1975 to those allowing real-time DNA sequencing today. Sequencing methods that utilize clonal amplicons for parallel multistrand sequencing comprise the basics of currently available next generation sequencing techniques. Nowadays next generation sequencing is mainly used for basic research in functional genomics, providing quintessential information in the meta-analyses of data from signal transduction pathways, onthologies, proteomics and metabolomics. Although next generation sequencing is yet sparsely used in clinical practice, cardiology, oncology and epidemiology already show an immense need for the additional knowledge obtained by this new technology. The main barrier of its spread is the lack of standardization of analysis evaluation methods, which obscure objective assessment of the results. Orv. Hetil., 2011, 152, 55–62.


2019 ◽  
Author(s):  
Seongmin Kim ◽  
Se Hee Lee ◽  
Kyung Jin Min ◽  
Sanghoon Lee ◽  
Jin Hwa Hong ◽  
...  

Abstract Background: The vaginal microbiome has been widely investigated because of its utility in the diagnosis of vaginitis and its connection to various conditions. However, its relationship with impaired ovarian function and the influence of environmental pollutants have not been evaluated. Here, we conducted a next-generation sequencing study of the vaginal microbiome in young females with normal and decreased ovarian function and analyzed its correlation with various environmental pollutants. Methods: Vaginal swabs were collected from 92 individuals (22 with impaired ovarian function and 70 with normal function), and the vaginal microbiome was analyzed using next-generation sequencing. The 16S rDNA sequences were assembled by Fast Length Adjustment of SHort reads (FLASH) and clustered by Operational Taxonomic Units (OTUs). Diversity analysis was performed using Quantitative Insights Into Microbial Ecology (QIIME). Laboratory findings, including hormonal status were measured. Results: Most characteristics of the two groups were similar, except that the impaired function group showed lower AMH and higher FSH (p < 0.01 and p = 0.04, respectively). Among the most abundant taxa, several species differed; however, only two species showed significant differences: Propionibacterium acnes and Prevotella copri. The heat map did not show significant differences between the groups. Canonical correlation analysis revealed that more environmental pollutants were related to changes in the vaginal microbiome in the impaired ovarian function group than in the normal group. Conclusion: The vaginal microbiomes in young women with decreased ovarian function tended to be more sensitive to various environmental pollutants, especially volatile organic compounds (VOCs). Therefore, females with impaired ovarian function could be more vulnerable to VOCs.


Cancer ◽  
2019 ◽  
Vol 125 (14) ◽  
pp. 2338-2344 ◽  
Author(s):  
Betina Yanez ◽  
Laura C. Bouchard ◽  
David Cella ◽  
Jeffrey A. Sosman ◽  
Sheetal M. Kircher ◽  
...  

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