scholarly journals Spatial pattern of genetic diversity in field populations of Fusarium incarnatum‐equiseti species complex

2021 ◽  
Author(s):  
Sephra N. Rampersad
2021 ◽  
Author(s):  
Drew R. Schield ◽  
Elizabeth S.C. Scordato ◽  
Chris C.R. Smith ◽  
Javan K. Carter ◽  
Sidi Imad Cherkaoui ◽  
...  

2000 ◽  
Vol 23 (3) ◽  
pp. 541-544 ◽  
Author(s):  
José Alexandre Felizola Diniz-Filho ◽  
Mariana Pires de Campos Telles

In the present study, we used both simulations and real data set analyses to show that, under stochastic processes of population differentiation, the concepts of spatial heterogeneity and spatial pattern overlap. In these processes, the proportion of variation among and within a population (measured by G ST and 1 - G ST, respectively) is correlated with the slope and intercept of a Mantel's test relating genetic and geographic distances. Beyond the conceptual interest, the inspection of the relationship between population heterogeneity and spatial pattern can be used to test departures from stochasticity in the study of population differentiation.


Author(s):  
Jasper John A. Obico ◽  
Julie F. Barcelona ◽  
Vincent Bonhomme ◽  
Marie Hale ◽  
Pieter B. Pelser

Tetrastigma loheri (Vitaceae) is a vine species native to Borneo and the Philippines. Because it is a commonly encountered forest species in the Philippines, T. loheri is potentially suitable for studying patterns of genetic diversity and connectivity among fragmented forestecosystems in various parts of this country. However, previous research suggests that T. loheri is part of a species complex in the Philippines (i.e. the T. loheri s. l. complex) that potentially also contains Philippine plants identified as T. diepenhorstii, T. philippinense, T. stenophyllum, andT. trifoliolatum. This uncertainty about its taxonomic delimitation can make it challenging to draw conclusions that are relevant to conservation from genetic studies using this species. Here, we tested the hypothesis that T. loheri s. l. is composed of more than one species in the Philippines.For this, we used generalized mixed Yule coalescent (GMYC) and Poisson tree process (PTP) species delimitation models to identify clades within DNA sequence phylogenies of T. loheri s. l. that might constitute species within this complex. Although these methods identified several putative species, these are statistically poorly supported and subsequent random forest analyses using a geometric morphometric leafshape dataset and several other vegetative characters did not result in the identification of characters that can be used to discriminate these putative species morphologically. Furthermore, the results of principal component and principal coordinates analyses of these data suggest the absence of morphological discontinuities within the species complex. Under a unified species concept that uses phylogenetic and morphological distinction as operational criteria for species recognition, we therefore conclude that the currently available data do not support recognizing multiple species in the T. loheri s. l. complex. This implies that T. loheri is best considered as a single, morphologically variable specieswhen used for studying patterns of genetic diversity and connectivity in the Philippines.


2008 ◽  
Vol 26 (2) ◽  
pp. 421-431 ◽  
Author(s):  
F. Catania ◽  
F. Wurmser ◽  
A. A. Potekhin ◽  
E. Przybos ◽  
M. Lynch

2017 ◽  
Vol 17 (1) ◽  
Author(s):  
Ana Lúcia A. Segatto ◽  
Maikel Reck-Kortmann ◽  
Caroline Turchetto ◽  
Loreta B. Freitas

2017 ◽  
Vol 8 ◽  
Author(s):  
Noura Yahiaoui ◽  
Jean-Jacques Chéron ◽  
Santatra Ravelomanantsoa ◽  
Azali A. Hamza ◽  
Bobb Petrousse ◽  
...  

mSphere ◽  
2017 ◽  
Vol 2 (1) ◽  
Author(s):  
Kyung J. Kwon-Chung ◽  
John E. Bennett ◽  
Brian L. Wickes ◽  
Wieland Meyer ◽  
Christina A. Cuomo ◽  
...  

ABSTRACT Cryptococcosis is a potentially lethal disease of humans/animals caused by Cryptococcus neoformans and Cryptococcus gattii. Distinction between the two species is based on phenotypic and genotypic characteristics. Recently, it was proposed that C. neoformans be divided into two species and C. gattii into five species based on a phylogenetic analysis of 115 isolates. While this proposal adds to the knowledge about the genetic diversity and population structure of cryptococcosis agents, the published genotypes of 2,606 strains have already revealed more genetic diversity than is encompassed by seven species. Naming every clade as a separate species at this juncture will lead to continuing nomenclatural instability. In the absence of biological differences between clades and no consensus about how DNA sequence alone can delineate a species, we recommend using “Cryptococcus neoformans species complex” and “C. gattii species complex” as a practical intermediate step, rather than creating more species. This strategy recognizes genetic diversity without creating confusion.


2012 ◽  
Vol 167 (5) ◽  
pp. 283-291 ◽  
Author(s):  
Éva Fekete ◽  
Erzsébet Fekete ◽  
László Irinyi ◽  
Levente Karaffa ◽  
Mariann Árnyasi ◽  
...  

2019 ◽  
Vol 184 (1) ◽  
pp. 45-51 ◽  
Author(s):  
Fernanda Harumi Maruyama ◽  
Daphine Ariadne Jesus de Paula ◽  
Isabela de Godoy Menezes ◽  
Olívia Cometti Favalessa ◽  
Rosane Christine Hahn ◽  
...  

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