Combined and differential effects of alpha‐thalassemia and HbF‐quantitative trait loci in Senegalese hydroxyurea‐free children with sickle cell anemia

2019 ◽  
Author(s):  
Fatou Gueye Tall ◽  
Cyril Martin ◽  
El Hadji Malick Ndour ◽  
Céline Renoux ◽  
Indou Déme Ly ◽  
...  
Keyword(s):  
Quantitative Trait Loci ◽  
Sickle Cell ◽  
Sickle Cell Anemia ◽  
Quantitative Trait ◽  
Differential Effects ◽  
Alpha Thalassemia ◽  
Trait Loci

Fetal Hemoglobin In Sickle Cell Anemia: Molecular Characterization of the High Fetal Hemoglobin Phenotype In African American Patients

Blood ◽  
2010 ◽  
Vol 116 (21) ◽  
pp. 2068-2068
Author(s):  
Idowu Akinsheye ◽  
Nadia Solovieff ◽  
Anita Malek ◽  
Duyen A. Ngo ◽  
Martin H. Steinberg ◽  
...  
Keyword(s):  
African American ◽  
Quantitative Trait Loci ◽  
Sickle Cell ◽  
Sickle Cell Anemia ◽  
Quantitative Trait ◽  
Binding Sites ◽  
Fetal Hemoglobin ◽  
Control Group ◽  
Trait Loci ◽  
Dna Fragment

Abstract Abstract 2068 HbF interferes with deoxygenated HbS polymerization, and is a major genetic modifier of sickle cell anemia severity. In this study, we attempted to identify genetic factors responsible for HbF production in a small group of African American sickle cell anemia patients who have markedly elevated HbF levels. Initially, patients with HbF of more than 11% as determined by HPLC were selected. The following were excluded: age less than 5; MCV greater than 100; presence of HPFH 1 and 2 based on specific gap-PCR tests; other β-globin gene deletions as determined by multiplex ligation-dependent probe amplification (MLPA). We further excluded rare HBG1 and 2 promoter HPFH mutations by nucleotide sequencing. In the end, a unique group of 20 patients were identified for further studies. Their mean age was 16.3 ± 8.3 years; Hb 9.0 ± 1.3 g/dL; MCV 87.9 ± 7.3 fL; and Hb F 17.2 ± 4.8% (range 11–29%). A control group of 30 African American patients were chosen. They had similar age, Hb, and MCV, but their HbF was 5.0 ± 2.5% (range 0.5–8.8%). These patients were examined for the 3 known major HbF quantitative trait loci: the Xmn1 restriction site C/T polymorphism at NT -158 upstream of HBG2; the BCL11A polymorphism on Chr2p16; the HBS1L-MYB intergenic polymorphism on Chr6q23. These 3 HbF quantitative trait loci collectively account for 20–50% of HbF variance in different populations. We found a significant association between high HbF and BCL11A and HBS1L-MYB intergenic region QTLs in these patients, but these account for only 20% of HbF variance (Table). These results were further validated in 590 patients of similar age from the Cooperative Study of Sickle Cell Disease, 57 patients with HbF 20.6 ± 8.2% and 533 patients with HbF 3.1 ± 1.5% (Table). To further explore other possible causes of elevated HbF, we sequenced 8.6 kb DNA fragment between HBG1 and HBD in 15 high HbF and 15 control patients. This DNA fragment includes the 7.2 kb Corfu deletion that is associated with elevated HbF levels and also binding sites for BCL11A. Twenty SNPs were found. The minor allele frequencies were consistently higher in the high HbF group, but the difference was found to be statistically significant only in 4 SNPs, 3 SNPs between positions 49213 and 49994 and 1 SNP at position 54541 (P = 0.001 to 0.04), suggesting that polymorphisms in this region might contribute to HbF expression in African American sickle cell anemia patients. The G→A polymorphism at position 49876 creates a C/EBP binding site which is not present in the major allele. The G→A polymorphism at position 49994 eliminates an AP-1 and NF-E2 binding sites, which are present in the major alleles. All 3 factors are erythroid transcription factors. The possible functional roles of these minor alleles found in significantly higher frequencies in the high HbF patients need to be further investigated. Disclosures: No relevant conflicts of interest to declare.

HbF-promoting polymorphisms may specifically reduce the residual risk of cerebral vasculopathy in SCA children with alpha-thalassemia

2020 ◽  
pp. 1-6
Author(s):  
Philippe Joly ◽  
Nathalie Bonello-Palot ◽  
Catherine Badens ◽  
Serge Pissard ◽  
Abdourahim Chamouine ◽  
...  
Keyword(s):  
Quantitative Trait Loci ◽  
Blood Cell ◽  
Sickle Cell Anemia ◽  
Red Blood Cell ◽  
Quantitative Trait ◽  
Genetic Modifiers ◽  
Cell Deformability ◽  
Cell Rheology ◽  
Alpha Thalassemia ◽  
Hbf Level

Sickle cell anemia (SCA) is a disease characterized by abnormal red blood cell rheology. Because of their effects on HbS polymerization and red blood cell deformability, alpha-thalassemia and the residual HbF level are known genetic modifiers of the disease. The aim of our study was to determine if the number of HbF quantitative trait loci (QTL) would also favor a specific sub-phenotype of SCA as it is the case for alpha-thalassemia. Our results confirmed that alpha-thalassemia protected from cerebral vasculopathy but increased the risk for frequent painful vaso-occlusive crises. We also showed that more HbF-QTL may provide an additional and specific protection against cerebral vasculopathy but only for children with alpha-thalassemia (-α/αα or -α/-α genotypes).

Identification of cis-regulated genes in quantitative trait loci driving liver fibrosis

2012 ◽  
Vol 50 (08) ◽  
Author(s):  
R Hall ◽  
R Müllenbach ◽  
S Huss ◽  
R Alberts ◽  
K Schughart ◽  
...  
Keyword(s):  
Quantitative Trait Loci ◽  
Liver Fibrosis ◽  
Quantitative Trait ◽  
Trait Loci

Identification of NASH Quantitative Trait Loci (QTLs) using in silico mapping analysis in inbred mice

2004 ◽  
Vol 42 (08) ◽  
Author(s):  
F Lammert ◽  
S Hillebrandt ◽  
S Matern ◽  
K Spatz ◽  
RM Green
Keyword(s):  
Quantitative Trait Loci ◽  
Quantitative Trait ◽  
In Silico ◽  
Inbred Mice ◽  
In Silico Mapping ◽  
Mapping Analysis ◽  
Trait Loci

Quantitative trait loci polymorphism in the reserve population of dual-purpose chickens

2018 ◽  
Vol 20 (4) ◽  
pp. 74-80
Author(s):  
L. V. Shulika ◽  
Keyword(s):  
Quantitative Trait Loci ◽  
Quantitative Trait ◽  
Dual Purpose ◽  
Trait Loci
Sign in / Sign up

Export Citation Format

Share Document