SAXSMoW 3.0: New advances in the determination of the molecular weight of proteins in dilute solutions from SAXS intensity data on a relative scale

2021 ◽  
Author(s):  
Mario Oliveira Neto ◽  
Adriano Freitas Fernandes ◽  
Vassili Piiadov ◽  
Aldo Felix Craievich ◽  
Evandro Ares Araújo ◽  
...  
2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Alexander Zhigunov ◽  
Josef Pleštil

AbstractBoth small-angle scattering methods, X-rays (SAXS) and neutrons (SANS) rank among the methods that facilitate the determination of the molar mass of nanoparticles. Using this measure, aggregation or degradation processes are easy to follow. Mono- and multichain assemblies of nanoparticles in solution could be resolved, swelling ratio can also be obtained. In this work, we present a method that allows extraction of additional information, including molecular weight, from a single scattering curve, even on a relative scale. The underlying theory and step-by-step procedure are described.


2009 ◽  
Vol 43 (1) ◽  
pp. 101-109 ◽  
Author(s):  
H. Fischer ◽  
M. de Oliveira Neto ◽  
H. B. Napolitano ◽  
I. Polikarpov ◽  
A. F. Craievich

This paper describes a new and simple method to determine the molecular weight of proteins in dilute solution, with an error smaller than ∼10%, by using the experimental data of a single small-angle X-ray scattering (SAXS) curve measured on a relative scale. This procedure does not require the measurement of SAXS intensity on an absolute scale and does not involve a comparison with another SAXS curve determined from a known standard protein. The proposed procedure can be applied to monodisperse systems of proteins in dilute solution, either in monomeric or multimeric state, and it has been successfully tested on SAXS data experimentally determined for proteins with known molecular weights. It is shown here that the molecular weights determined by this procedure deviate from the known values by less than 10% in each case and the average error for the test set of 21 proteins was 5.3%. Importantly, this method allows for an unambiguous determination of the multimeric state of proteins with known molecular weights.


Author(s):  
Douglas L. Dorset

The quantitative use of electron diffraction intensity data for the determination of crystal structures represents the pioneering achievement in the electron crystallography of organic molecules, an effort largely begun by B. K. Vainshtein and his co-workers. However, despite numerous representative structure analyses yielding results consistent with X-ray determination, this entire effort was viewed with considerable mistrust by many crystallographers. This was no doubt due to the rather high crystallographic R-factors reported for some structures and, more importantly, the failure to convince many skeptics that the measured intensity data were adequate for ab initio structure determinations.We have recently demonstrated the utility of these data sets for structure analyses by direct phase determination based on the probabilistic estimate of three- and four-phase structure invariant sums. Examples include the structure of diketopiperazine using Vainshtein's 3D data, a similar 3D analysis of the room temperature structure of thiourea, and a zonal determination of the urea structure, the latter also based on data collected by the Moscow group.


1994 ◽  
Vol 59 (10) ◽  
pp. 2227-2234 ◽  
Author(s):  
Václav Stužka ◽  
Jaromír Souček

A new method has been developed for the indirect determination of nitroso- and nitrophenols by atomic absorption spectrometry (AAS) after extraction of ionic associates involving bipyridylocopper(II) (CuDP) or phenanthrolinocopper(II) (CuPH) complexes. Nitrobenzene and methyl isobutyl ketone appeared to be suitable for the extraction. It was possible to determine several tenths to hundredths of a milligram of nitrophenol in a litre. Extractable associates with CuDP and CuPH are formed by phenols possessing two substituents or by higher molecular weight phenols such as naphthol or hydroxyquinoline. Monosubstituted phenols fail to form associates of this kind.


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