i-RUBY: A novel software for quantitative analysis of highly accurate shotgun-proteomics liquid chromatography/tandem mass spectrometry data obtained without stable-isotope labeling of proteins

Kazuya Wada; Atsushi Ogiwara; Keiko Nagasaka; Naoki Tanaka; Yasuhiko Komatsu

doi:10.1002/rcm.4943

i-RUBY: A novel software for quantitative analysis of highly accurate shotgun-proteomics liquid chromatography/tandem mass spectrometry data obtained without stable-isotope labeling of proteins

Rapid Communications in Mass Spectrometry ◽

10.1002/rcm.4943 ◽

2011 ◽

Vol 25 (7) ◽

pp. 960-968 ◽

Cited By ~ 3

Author(s):

Kazuya Wada ◽

Atsushi Ogiwara ◽

Keiko Nagasaka ◽

Naoki Tanaka ◽

Yasuhiko Komatsu

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Quantitative Analysis ◽

Isotope Labeling ◽

Shotgun Proteomics ◽

Mass Spectrometry Data ◽

Tandem Mass ◽

Chromatography Tandem Mass Spectrometry ◽

Liquid Chromatography Tandem Mass ◽

Tandem Mass Spectrometry Data

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The reproducible acquisition of comparative liquid chromatography/tandem mass spectrometry data from complex biological samples

Rapid Communications in Mass Spectrometry ◽

10.1002/rcm.1538 ◽

2004 ◽

Vol 18 (15) ◽

pp. 1697-1710 ◽

Cited By ~ 15

Author(s):

Ian I. Stewart ◽

Li Zhao ◽

Thierry Le Bihan ◽

Brett Larsen ◽

Salvatore Scozzaro ◽

...

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Tandem Mass Spectrometry ◽

Biological Samples ◽

Mass Spectrometry Data ◽

Tandem Mass ◽

Chromatography Tandem Mass Spectrometry ◽

Liquid Chromatography Tandem Mass ◽

Tandem Mass Spectrometry Data

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Average peptide score: a useful parameter for identification of proteins derived from database searches of liquid chromatography/tandem mass spectrometry data

Rapid Communications in Mass Spectrometry ◽

10.1002/rcm.1741 ◽

2004 ◽

Vol 19 (1) ◽

pp. 9-14 ◽

Cited By ~ 12

Author(s):

Cindy Lou Chepanoske ◽

Bonnie E. Richardson ◽

Moritz von Rechenberg ◽

John M. Peltier

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Tandem Mass Spectrometry ◽

Mass Spectrometry Data ◽

Tandem Mass ◽

Chromatography Tandem Mass Spectrometry ◽

Liquid Chromatography Tandem Mass ◽

Tandem Mass Spectrometry Data

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The Limit of Detection in Generalized Least-Squares Calibrations: An Example Using Alprazolam Liquid Chromatography-Tandem Mass Spectrometry Data

Journal of Analytical Toxicology ◽

10.1093/jat/33.3.129 ◽

2009 ◽

Vol 33 (3) ◽

pp. 129-142 ◽

Cited By ~ 14

Author(s):

P. J. Ogren ◽

A. Meetze ◽

W. C. Duer

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Tandem Mass Spectrometry ◽

Limit Of Detection ◽

Generalized Least Squares ◽

Mass Spectrometry Data ◽

Tandem Mass ◽

Chromatography Tandem Mass Spectrometry ◽

Liquid Chromatography Tandem Mass ◽

Tandem Mass Spectrometry Data

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RNAModMapper: RNA Modification Mapping Software for Analysis of Liquid Chromatography Tandem Mass Spectrometry Data

Analytical Chemistry ◽

10.1021/acs.analchem.7b01780 ◽

2017 ◽

Vol 89 (20) ◽

pp. 10744-10752 ◽

Cited By ~ 21

Author(s):

Ningxi Yu ◽

Peter A. Lobue ◽

Xiaoyu Cao ◽

Patrick A. Limbach

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Tandem Mass Spectrometry ◽

Mass Spectrometry Data ◽

Rna Modification ◽

Tandem Mass ◽

Chromatography Tandem Mass Spectrometry ◽

Mapping Software ◽

Liquid Chromatography Tandem Mass ◽

Tandem Mass Spectrometry Data

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A comparative evaluation of software for the analysis of liquid chromatography-tandem mass spectrometry data from isotope coded affinity tag experiments

PROTEOMICS ◽

10.1002/pmic.200401187 ◽

2005 ◽

Vol 5 (11) ◽

pp. 2748-2760 ◽

Cited By ~ 19

Author(s):

Robert Moulder ◽

Jan-Jonas Filén ◽

Jussi Salmi ◽

Mikko Katajamaa ◽

Olli S. Nevalainen ◽

...

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Tandem Mass Spectrometry ◽

Comparative Evaluation ◽

Mass Spectrometry Data ◽

Tandem Mass ◽

Affinity Tag ◽

Chromatography Tandem Mass Spectrometry ◽

Liquid Chromatography Tandem Mass ◽

Tandem Mass Spectrometry Data

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Recognizing Contamination Fragment Ions in Liquid Chromatography–Tandem Mass Spectrometry Data

Journal of the American Society for Mass Spectrometry ◽

10.1021/jasms.0c00478 ◽

2021 ◽

Author(s):

Shipei Xing ◽

Huaxu Yu ◽

Min Liu ◽

Qingquan Jia ◽

Zhi Sun ◽

...

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Tandem Mass Spectrometry ◽

Mass Spectrometry Data ◽

Tandem Mass ◽

Fragment Ions ◽

Chromatography Tandem Mass Spectrometry ◽

Liquid Chromatography Tandem Mass ◽

Tandem Mass Spectrometry Data

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Discovery of Neolignan Glycosides with Acetylcolinesterase Inhibitory Activity from Huangjinya Green Tea Guided by Ultra Performance Liquid Chromatography–Tandem Mass Spectrometry Data and Global Natural Product Social Molecular Networking

Journal of Agricultural and Food Chemistry ◽

10.1021/acs.jafc.9b05605 ◽

2019 ◽

Vol 67 (43) ◽

pp. 11986-11993 ◽

Cited By ~ 4

Author(s):

Hao-Yue Wu ◽

Jia-Ping Ke ◽

Wei Wang ◽

Ya-Shuai Kong ◽

Peng Zhang ◽

...

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Tandem Mass Spectrometry ◽

Natural Product ◽

Ultra Performance Liquid Chromatography ◽

Mass Spectrometry Data ◽

Tandem Mass ◽

Chromatography Tandem Mass Spectrometry ◽

Liquid Chromatography Tandem Mass ◽

Tandem Mass Spectrometry Data

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Nearline acquisition and processing of liquid chromatography-tandem mass spectrometry data

Metabolomics ◽

10.1007/s11306-012-0401-0 ◽

2012 ◽

Vol 9 (S1) ◽

pp. 84-91 ◽

Cited By ~ 22

Author(s):

Steffen Neumann ◽

Andrea Thum ◽

Christoph Böttcher

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Tandem Mass Spectrometry ◽

Mass Spectrometry Data ◽

Tandem Mass ◽

Chromatography Tandem Mass Spectrometry ◽

Liquid Chromatography Tandem Mass ◽

Tandem Mass Spectrometry Data

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Precolumn derivatization of cysteine residues for quantitative analysis of five major cytochrome P450 isoenzymes by liquid chromatography/tandem mass spectrometry

Rapid Communications in Mass Spectrometry ◽

10.1002/rcm.3202 ◽

2007 ◽

Vol 21 (20) ◽

pp. 3234-3244 ◽

Cited By ~ 13

Author(s):

Xiaotao Duan ◽

Xiaoyan Chen ◽

Yiming Yang ◽

Dafang Zhong

Keyword(s):

Mass Spectrometry ◽

Cytochrome P450 ◽

Liquid Chromatography ◽

Quantitative Analysis ◽

Tandem Mass Spectrometry ◽

Cysteine Residues ◽

Precolumn Derivatization ◽

Tandem Mass ◽

Chromatography Tandem Mass Spectrometry ◽

Liquid Chromatography Tandem Mass

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Quantitative Analysis of 26 Opioids, Cocaine, and Their Metabolites in Human Blood by Ultra Performance Liquid Chromatography–Tandem Mass Spectrometry

Therapeutic Drug Monitoring ◽

10.1097/ftd.0b013e31828e7e6b ◽

2013 ◽

Vol 35 (4) ◽

pp. 510-521 ◽

Cited By ~ 27

Author(s):

María del Mar Ramírez Fernández ◽

Sarah M. R. Wille ◽

Nathalie Kummer ◽

Vincent Di Fazio ◽

Evi Ruyssinckx ◽

...

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Quantitative Analysis ◽

Tandem Mass Spectrometry ◽

Human Blood ◽

Ultra Performance Liquid Chromatography ◽

Tandem Mass ◽

Chromatography Tandem Mass Spectrometry ◽

Liquid Chromatography Tandem Mass

Download Full-text