2020 ◽  
Vol 202 (8) ◽  
Author(s):  
Sasha A. Weiditch ◽  
Sarah C. Bickers ◽  
Diane Bona ◽  
Karen L. Maxwell ◽  
Voula Kanelis

ABSTRACT The last gene in the genome of the bacteriophage HK97 encodes gp74, an HNH endonuclease. HNH motifs contain two conserved His residues and an invariant Asn residue, and they adopt a ββα structure. gp74 is essential for phage head morphogenesis, likely because gp74 enhances the specific endonuclease activity of the HK97 terminase complex. Notably, the ability of gp74 to enhance the terminase-mediated cleavage of the phage cos site requires an intact HNH motif in gp74. Mutation of H82, the conserved metal-binding His residue in the HNH motif, to Ala abrogates gp74-mediated stimulation of terminase activity. Here, we present nuclear magnetic resonance (NMR) studies demonstrating that gp74 contains an α-helical insertion in the Ω-loop, which connects the two β-strands of the ββα fold, and a disordered C-terminal tail. NMR data indicate that the Ω-loop insert makes contacts to the ββα fold and influences the ability of gp74 to bind divalent metal ions. Further, the Ω-loop insert and C-terminal tail contribute to gp74-mediated DNA digestion and to gp74 activity in phage morphogenesis. The data presented here enrich our molecular-level understanding of how HNH endonucleases enhance terminase-mediated digestion of the cos site and contribute to the phage replication cycle. IMPORTANCE This study demonstrates that residues outside the canonical ββα fold, namely, the Ω-loop α-helical insert and a disordered C-terminal tail, regulate the activity of the HNH endonuclease gp74. The increased divalent metal ion binding when the Ω-loop insert is removed compared to reduced cos site digestion and phage formation indicates that the Ω-loop insert plays multiple regulatory roles. The data presented here provide insights into the molecular basis of the involvement of HNH proteins in phage DNA packing.


1993 ◽  
Vol 21 (3) ◽  
pp. 627-634 ◽  
Author(s):  
Peter G. Stockley ◽  
Nichola J. Stonehouse ◽  
Catherine Walton ◽  
Dawn A. Walters ◽  
Gloria Medina ◽  
...  

1999 ◽  
Vol 181 (4) ◽  
pp. 1352-1355 ◽  
Author(s):  
Krishnarao Appasani ◽  
David S. Thaler ◽  
Edward B. Goldberg

ABSTRACT The T4 head protein, gp2, promotes head-tail joining during phage morphogenesis and is also incorporated into the phage head. It protects the injected DNA from degradation by exonuclease V during the subsequent infection. In this study, we show that recombinant gp2, a very basic protein, rapidly kills the cells in which it is expressed. To further illustrate the protectiveness of gp2 for DNA termini, we compare the effect of gp2 expression on Red-mediated and Int-mediated recombination. Red-mediated recombination is nonspecific and requires the transient formation of double-stranded DNA termini. Int-mediated recombination, on the other hand, is site specific and does not require chromosomal termini. Red-mediated recombination is inhibited to a much greater extent than is Int-mediated recombination. We conclude from the results of these physiological and genetic experiments that T4 gp2 expression, like Mu Gam expression, kills bacteria by binding to double-stranded DNA termini, the most likely mode for its protection of entering phage DNA from exonuclease V.


2012 ◽  
Vol 78 (19) ◽  
pp. 6890-6899 ◽  
Author(s):  
Simon J. Labrie ◽  
Denise M. Tremblay ◽  
Maxim Moisan ◽  
Manuela Villion ◽  
Alfonso H. Magadán ◽  
...  

ABSTRACTThe dairy industry uses the mesophilic, Gram-positive, lactic acid bacterium (LAB)Lactococcus lactisto produce an array of fermented milk products. Milk fermentation processes are susceptible to contamination by virulent phages, but a plethora of phage control strategies are available. One of the most efficient is to use LAB strains carrying phage resistance systems such as abortive infection (Abi) mechanisms. Yet, the mode of action of most Abi systems remains poorly documented. Here, we shed further light on the antiviral activity of the lactococcal AbiT system. Twenty-eight AbiT-resistant phage mutants derived from the wild-type AbiT-sensitive lactococcal phages p2, bIL170, and P008 were isolated and characterized. Comparative genomic analyses identified three different genes that were mutated in these virulent AbiT-insensitive phage derivatives:e14(bIL170 [e14bIL170]),orf41(P008 [orf41P008]), andorf6(p2 [orf6p2] and P008 [orf6P008]). The genese14bIL170andorf41P008are part of the early-expressed genomic region, but bioinformatic analyses did not identify their putative function.orf6is found in the phage morphogenesis module. Antibodies were raised against purified recombinant ORF6, and immunoelectron microscopy revealed that it is the major capsid protein (MCP). Coexpression inL. lactisof ORF6p2and ORF5p2, a protease, led to the formation of procapsids. To our knowledge, AbiT is the first Abi system involving distinct phage genes.


1988 ◽  
Vol 28 (2) ◽  
pp. 64-69
Author(s):  
Akira AOYAMA

2011 ◽  
Vol 77 (24) ◽  
pp. 8705-8713 ◽  
Author(s):  
Kristina Creuzburg ◽  
Sabine Heeren ◽  
Claudia M. Lis ◽  
Markus Kranz ◽  
Michael Hensel ◽  
...  

ABSTRACTIn this study, we characterized the genetic background of variousnleAvariants in 106 Shiga toxin-producingEscherichia coli(STEC) and enteropathogenicEscherichia coli(EPEC) strains. The flanking regions of eightnleAvariants were analyzed by DNA sequencing and compared with the corresponding regions of five previously described NleA-encoding prophages. The analyzednleAvariants were all located downstream of the DNA region responsible for phage morphogenesis. In particular, the type III effector genesavrA,ospB,nleH, andnleGand IS elements were detected in the neighborhood ofnleA. The structure of the eight analyzed regions flankingnleAprimarily resembled the corresponding region of the NleA4795-encoding prophage BP-4795. Using PCR, the gene order flanking 13nleAvariants in strains of different serogroups was compared to the respective regions in reference strains. The analyses showed that strains which harbor prophages with conserved flanking regions of a particularnleAvariant predominantly occurred, and IS elements were additionally detected in these regions. We were able to mobilizenleAby transduction in 20% of strains determined, which comprised in particular EPEC strains harboring annleAvariant, the gene encoding the protein known as “EspI-like.” Plaque hybridization was used to identify phages that harbor the genesstxandnleA. However, only two strains harbored variantnleA4795in the genome of an Stx1 prophage.


2007 ◽  
Vol 74 (3) ◽  
pp. 861-874 ◽  
Author(s):  
Mickaël Boyer ◽  
Jacqueline Haurat ◽  
Sylvie Samain ◽  
Béatrice Segurens ◽  
Frédérick Gavory ◽  
...  

ABSTRACT The prevalence of bacteriophages was investigated in 24 strains of four species of plant growth-promoting rhizobacteria belonging to the genus Azospirillum. Upon induction by mitomycin C, the release of phage particles was observed in 11 strains from three species. Transmission electron microscopy revealed two distinct sizes of particles, depending on the identity of the Azospirillum species, typical of the Siphoviridae family. Pulsed-field gel electrophoresis and hybridization experiments carried out on phage-encapsidated DNAs revealed that all phages isolated from A. lipoferum and A. doebereinerae strains had a size of about 10 kb whereas all phages isolated from A. brasilense strains displayed genome sizes ranging from 62 to 65 kb. Strong DNA hybridizing signals were shown for most phages hosted by the same species whereas no homology was found between phages harbored by different species. Moreover, the complete sequence of the A. brasilense Cd bacteriophage (ΦAb-Cd) genome was determined as a double-stranded DNA circular molecule of 62,337 pb that encodes 95 predicted proteins. Only 14 of the predicted proteins could be assigned functions, some of which were involved in DNA processing, phage morphogenesis, and bacterial lysis. In addition, the ΦAb-Cd complete genome was mapped as a prophage on a 570-kb replicon of strain A. brasilense Cd, and a region of 27.3 kb of ΦAb-Cd was found to be duplicated on the 130-kb pRhico plasmid previously sequenced from A. brasilense Sp7, the parental strain of A. brasilense Cd.


1969 ◽  
Vol 3 (1) ◽  
pp. 323-342 ◽  
Author(s):  
M Levine
Keyword(s):  

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