Bio-Macromolecules and Hydration Water Dynamics

Author(s):  
Kathleen Wood ◽  
Martin Weik
2016 ◽  
Vol 113 (30) ◽  
pp. 8424-8429 ◽  
Author(s):  
Yangzhong Qin ◽  
Lijuan Wang ◽  
Dongping Zhong

Protein hydration is essential to its structure, dynamics, and function, but water–protein interactions have not been directly observed in real time at physiological temperature to our awareness. By using a tryptophan scan with femtosecond spectroscopy, we simultaneously measured the hydration water dynamics and protein side-chain motions with temperature dependence. We observed the heterogeneous hydration dynamics around the global protein surface with two types of coupled motions, collective water/side-chain reorientation in a few picoseconds and cooperative water/side-chain restructuring in tens of picoseconds. The ultrafast dynamics in hundreds of femtoseconds is from the outer-layer, bulk-type mobile water molecules in the hydration shell. We also found that the hydration water dynamics are always faster than protein side-chain relaxations but with the same energy barriers, indicating hydration shell fluctuations driving protein side-chain motions on the picosecond time scales and thus elucidating their ultimate relationship.


2018 ◽  
Vol 115 (32) ◽  
pp. 8093-8098 ◽  
Author(s):  
Jacob I. Monroe ◽  
M. Scott Shell

The interactions of water with solid surfaces govern their apparent hydrophobicity/hydrophilicity, influenced at the molecular scale by surface coverage of chemical groups of varied nonpolar/polar character. Recently, it has become clear that the precise patterning of surface groups, and not simply average surface coverage, has a significant impact on the structure and thermodynamics of hydration layer water, and, in turn, on macroscopic interfacial properties. Here we show that patterning also controls the dynamics of hydration water, a behavior frequently thought to be leveraged by biomolecules to influence functional dynamics, but yet to be generalized. To uncover the role of surface heterogeneities, we couple a genetic algorithm to iterative molecular dynamics simulations to design the patterning of surface functional groups, at fixed coverage, to either minimize or maximize proximal water diffusivity. Optimized surface configurations reveal that clustering of hydrophilic groups increases hydration water mobility, while dispersing them decreases it, but only if hydrophilic moieties interact with water through directional, hydrogen-bonding interactions. Remarkably, we find that, across different surfaces, coverages, and patterns, both the chemical potential for inserting a methane-sized hydrophobe near the interface and, in particular, the hydration water orientational entropy serve as strong predictors for hydration water diffusivity, suggesting that these simple thermodynamic quantities encode the way surfaces control water dynamics. These results suggest a deep and intriguing connection between hydration water thermodynamics and dynamics, demonstrating that subnanometer chemical surface patterning is an important design parameter for engineering solid−water interfaces with applications spanning separations to catalysis.


2019 ◽  
Vol 123 (31) ◽  
pp. 19183-19194 ◽  
Author(s):  
Daria Noferini ◽  
Antonio Faraone ◽  
Marta Rossi ◽  
Eugene Mamontov ◽  
Emiliano Fratini ◽  
...  

2016 ◽  
Vol 1121 ◽  
pp. 80-85 ◽  
Author(s):  
Tatsuya Miyatou ◽  
Takashi Araya ◽  
Ryutaro Ohashi ◽  
Tomonori Ida ◽  
Motohiro Mizuno

2003 ◽  
Vol 85 (3) ◽  
pp. 1871-1875 ◽  
Author(s):  
Alexander L. Tournier ◽  
Jiancong Xu ◽  
Jeremy C. Smith

2013 ◽  
Vol 117 (14) ◽  
pp. 7358-7364 ◽  
Author(s):  
Emiliano Fratini ◽  
Antonio Faraone ◽  
Francesca Ridi ◽  
Sow-Hsin Chen ◽  
Piero Baglioni

2015 ◽  
Vol 112 (20) ◽  
pp. 6365-6370 ◽  
Author(s):  
Yann Fichou ◽  
Giorgio Schirò ◽  
François-Xavier Gallat ◽  
Cedric Laguri ◽  
Martine Moulin ◽  
...  

The paired helical filaments (PHF) formed by the intrinsically disordered human protein tau are one of the pathological hallmarks of Alzheimer disease. PHF are fibers of amyloid nature that are composed of a rigid core and an unstructured fuzzy coat. The mechanisms of fiber formation, in particular the role that hydration water might play, remain poorly understood. We combined protein deuteration, neutron scattering, and all-atom molecular dynamics simulations to study the dynamics of hydration water at the surface of fibers formed by the full-length human protein htau40. In comparison with monomeric tau, hydration water on the surface of tau fibers is more mobile, as evidenced by an increased fraction of translationally diffusing water molecules, a higher diffusion coefficient, and increased mean-squared displacements in neutron scattering experiments. Fibers formed by the hexapeptide 306VQIVYK311 were taken as a model for the tau fiber core and studied by molecular dynamics simulations, revealing that hydration water dynamics around the core domain is significantly reduced after fiber formation. Thus, an increase in water dynamics around the fuzzy coat is proposed to be at the origin of the experimentally observed increase in hydration water dynamics around the entire tau fiber. The observed increase in hydration water dynamics is suggested to promote fiber formation through entropic effects. Detection of the enhanced hydration water mobility around tau fibers is conjectured to potentially contribute to the early diagnosis of Alzheimer patients by diffusion MRI.


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