Real-Time Deformability Cytometry: Label-Free Functional Characterization of Cells

Author(s):  
Maik Herbig ◽  
Martin Kräter ◽  
Katarzyna Plak ◽  
Paul Müller ◽  
Jochen Guck ◽  
...  
2019 ◽  
Vol 13 (4) ◽  
pp. 295-305 ◽  
Author(s):  
Hien T. Ngoc Le ◽  
Junsub Kim ◽  
Jinsoo Park ◽  
Sungbo Cho

2011 ◽  
Vol 2011 ◽  
pp. 1-13 ◽  
Author(s):  
Monika Dzieciatkowska ◽  
Guihong Qi ◽  
Jinsam You ◽  
Kerry G. Bemis ◽  
Heather Sahm ◽  
...  

Cerebrospinal fluid (CSF) has been used for biomarker discovery of neurodegenerative diseases in humans since biological changes in the brain can be seen in this biofluid. Inactivation of A-T-mutated protein (ATM), a multifunctional protein kinase, is responsible for A-T, yet biochemical studies have not succeeded in conclusively identifying the molecular mechanism(s) underlying the neurodegeneration seen in A-T patients or the proteins that can be used as biomarkers for neurologic assessment of A-T or as potential therapeutic targets. In this study, we applied a high-throughput LC/MS-based label-free protein quantification technology to quantitatively characterize the proteins in CSF samples in order to identify differentially expressed proteins that can serve as potential biomarker candidates for A-T. Among 204 identified CSF proteins with high peptide-identification confidence, thirteen showed significant protein expression changes. Bioinformatic analysis revealed that these 13 proteins are either involved in neurodegenerative disorders or cancer. Future molecular and functional characterization of these proteins would provide more insights into the potential therapeutic targets for the treatment of A-T and the biomarkers that can be used to monitor or predict A-T disease progression. Clinical validation studies are required before any of these proteins can be developed into clinically useful biomarkers.


2017 ◽  
Vol 112 (3) ◽  
pp. 275a
Author(s):  
Maria Barthmes ◽  
Andre Bazzone ◽  
Stephan Holzhauser ◽  
Maximilian Kellner ◽  
Niels Fertig ◽  
...  

2008 ◽  
Vol 18 (19) ◽  
pp. 2938-2945 ◽  
Author(s):  
Deny Hartono ◽  
Xinyan Bi ◽  
Kun-Lin Yang ◽  
Lin-Yue Lanry Yung

2017 ◽  
Author(s):  
Philipp Rosendahl ◽  
Katarzyna Plak ◽  
Angela Jacobi ◽  
Martin Kraeter ◽  
Nicole Toepfner ◽  
...  

AbstractCell mechanical characterization has recently approached the throughput of conventional flow cytometers. However, this very sensitive, label-free approach still lacks the specificity of molecular markers. Here we combine real-time 1D-imaging fluorescence and deformability cytometry (RT-FDC) to merge the two worlds in one instrument — opening many new research avenues. We demonstrate its utility using sub-cellular fluorescence localization to identify mitotic cells and test for their mechanical changes in an RNAi screen.


2019 ◽  
Author(s):  
Ahmad Ahsan Nawaz ◽  
Marta Urbanska ◽  
Maik Herbig ◽  
Martin Nötzel ◽  
Martin Kräter ◽  
...  

The identification and separation of specific cells from heterogeneous populations is an essential prerequisite for further analysis or use. Conventional passive and active separation approaches rely on fluorescent or magnetic tags introduced to the cells of interest through molecular markers. Such labeling is time- and cost-intensive, can alter cellular properties, and might be incompatible with subsequent use, for example, in transplantation. Alternative label-free approaches utilizing morphological or mechanical features are attractive, but lack molecular specificity. Here we combine image-based real-time fluorescence and deformability cytometry (RT-FDC) with downstream cell sorting using standing surface acoustic waves (SSAW). We demonstrate basic sorting capabilities of the device by separating cell mimics and blood cell types based on fluorescence as well as deformability and other image parameters. The identification of blood sub-populations is enhanced by flow alignment and deformation of cells in the microfluidic channel constriction. In addition, the classification of blood cells using established fluorescence-based markers provides hundreds of thousands of labeled cell images used to train a deep neural network. The trained algorithm, with latency optimized to below 1 ms, is then used to identify and sort unlabeled blood cells at rates of 100 cells/sec. This approach transfers molecular specificity into label-free sorting and opens up new possibilities for basic biological research and clinical therapeutic applications.


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