Deep Learning Based Automatic Immune Cell Detection for Immunohistochemistry Images

Author(s):  
Ting Chen ◽  
Christophe Chefd’hotel
Sensors ◽  
2021 ◽  
Vol 21 (3) ◽  
pp. 863
Author(s):  
Vidas Raudonis ◽  
Agne Paulauskaite-Taraseviciene ◽  
Kristina Sutiene

Background: Cell detection and counting is of essential importance in evaluating the quality of early-stage embryo. Full automation of this process remains a challenging task due to different cell size, shape, the presence of incomplete cell boundaries, partially or fully overlapping cells. Moreover, the algorithm to be developed should process a large number of image data of different quality in a reasonable amount of time. Methods: Multi-focus image fusion approach based on deep learning U-Net architecture is proposed in the paper, which allows reducing the amount of data up to 7 times without losing spectral information required for embryo enhancement in the microscopic image. Results: The experiment includes the visual and quantitative analysis by estimating the image similarity metrics and processing times, which is compared to the results achieved by two wellknown techniques—Inverse Laplacian Pyramid Transform and Enhanced Correlation Coefficient Maximization. Conclusion: Comparatively, the image fusion time is substantially improved for different image resolutions, whilst ensuring the high quality of the fused image.


2021 ◽  
pp. 102270
Author(s):  
Ching-Wei Wang ◽  
Sheng-Chuan Huang ◽  
Yu-Ching Lee ◽  
Yu-Jie Shen ◽  
Shwu-Ing Meng ◽  
...  

Author(s):  
Yeman Brhane Hagos ◽  
Catherine SY Lecat ◽  
Dominic Patel ◽  
Lydia Lee ◽  
Thien-An Tran ◽  
...  

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Krisztian Koos ◽  
Gáspár Oláh ◽  
Tamas Balassa ◽  
Norbert Mihut ◽  
Márton Rózsa ◽  
...  

AbstractPatch clamp recording of neurons is a labor-intensive and time-consuming procedure. Here, we demonstrate a tool that fully automatically performs electrophysiological recordings in label-free tissue slices. The automation covers the detection of cells in label-free images, calibration of the micropipette movement, approach to the cell with the pipette, formation of the whole-cell configuration, and recording. The cell detection is based on deep learning. The model is trained on a new image database of neurons in unlabeled brain tissue slices. The pipette tip detection and approaching phase use image analysis techniques for precise movements. High-quality measurements are performed on hundreds of human and rodent neurons. We also demonstrate that further molecular and anatomical analysis can be performed on the recorded cells. The software has a diary module that automatically logs patch clamp events. Our tool can multiply the number of daily measurements to help brain research.


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