An Automatic Data Assimilation Framework for Patient-Specific Myocardial Mechanical Parameter Estimation

Author(s):  
Jiahe Xi ◽  
Pablo Lamata ◽  
Wenzhe Shi ◽  
Steven Niederer ◽  
Sander Land ◽  
...  
2015 ◽  
Vol 143 (5) ◽  
pp. 1568-1582 ◽  
Author(s):  
Juan Ruiz ◽  
Manuel Pulido

Abstract This work explores the potential of online parameter estimation as a technique for model error treatment under an imperfect model scenario, in an ensemble-based data assimilation system, using a simple atmospheric general circulation model, and an observing system simulation experiment (OSSE) approach. Model error is introduced in the imperfect model scenario by changing the value of the parameters associated with different schemes. The parameters of the moist convection scheme are the only ones to be estimated in the data assimilation system. In this work, parameter estimation is compared and combined with techniques that account for the lack of ensemble spread and for the systematic model error. The OSSEs show that when parameter estimation is combined with model error treatment techniques, multiplicative and additive inflation or a bias correction technique, parameter estimation produces a further improvement of analysis quality and medium-range forecast skill with respect to the OSSEs with model error treatment techniques without parameter estimation. The improvement produced by parameter estimation is mainly a consequence of the optimization of the parameter values. The estimated parameters do not converge to the value used to generate the observations in the imperfect model scenario; however, the analysis error is reduced and the forecast skill is improved.


Agriculture ◽  
2020 ◽  
Vol 10 (12) ◽  
pp. 606
Author(s):  
Alaa Jamal ◽  
Raphael Linker

Particle filter has received increasing attention in data assimilation for estimating model states and parameters in cases of non-linear and non-Gaussian dynamic processes. Various modifications of the original particle filter have been suggested in the literature, including integrating particle filter with Markov Chain Monte Carlo (PF-MCMC) and, later, using genetic algorithm evolutionary operators as part of the state updating process. In this work, a modified genetic-based PF-MCMC approach for estimating the states and parameters simultaneously and without assuming Gaussian distribution for priors is presented. The method was tested on two simulation examples on the basis of the crop model AquaCrop-OS. In the first example, the method was compared to a PF-MCMC method in which states and parameters are updated sequentially and genetic operators are used only for state adjustments. The influence of ensemble size, measurement noise, and mutation and crossover parameters were also investigated. Accurate and stable estimations of the model states were obtained in all cases. Parameter estimation was more challenging than state estimation and not all parameters converged to their true value, especially when the parameter value had little influence on the measured variables. Overall, the proposed method showed more accurate and consistent parameter estimation than the PF-MCMC with sequential estimation, which showed highly conservative behavior. The superiority of the proposed method was more pronounced when the ensemble included a large number of particles and the measurement noise was low.


2019 ◽  
Author(s):  
Jing Wang ◽  
Guigen Nie ◽  
Shengjun Gao ◽  
Changhu Xue

Abstract. Landslide displacement prediction has great practical engineering significance to landslide stability evaluation and early warning. The evolution of landslide is a complex dynamic process, applying classical prediction method will result in significant error. Data assimilation method offers a new way to merge multi-source data with the model. However, data assimilation is still deficient in the ability to meet the demand of dynamic landslide system. In this paper, simultaneous state-parameter estimation (SSPE) using particle filter-based data assimilation is applied to predict displacement of the landslide. Landslide SSPE assimilation strategy can make use of time-series displacements and hydrological information for the joint estimation of landslide displacement and model parameters, which can improve the performance considerably. We select Xishan Village, Sichuan province, China as experiment site to test SSPE assimilation strategy. Based on the comparison of actual monitoring data with prediction values, results strongly suggest the effectiveness and feasibility of SSPE assimilation strategy in short-term landslide displacement estimation.


2018 ◽  
Vol 25 (4) ◽  
pp. 731-746 ◽  
Author(s):  
Sangeetika Ruchi ◽  
Svetlana Dubinkina

Abstract. Over the years data assimilation methods have been developed to obtain estimations of uncertain model parameters by taking into account a few observations of a model state. The most reliable Markov chain Monte Carlo (MCMC) methods are computationally expensive. Sequential ensemble methods such as ensemble Kalman filters and particle filters provide a favorable alternative. However, ensemble Kalman filter has an assumption of Gaussianity. Ensemble transform particle filter does not have this assumption and has proven to be highly beneficial for an initial condition estimation and a small number of parameter estimations in chaotic dynamical systems with non-Gaussian distributions. In this paper we employ ensemble transform particle filter (ETPF) and ensemble transform Kalman filter (ETKF) for parameter estimation in nonlinear problems with 1, 5, and 2500 uncertain parameters and compare them to importance sampling (IS). The large number of uncertain parameters is of particular interest for subsurface reservoir modeling as it allows us to parameterize permeability on the grid. We prove that the updated parameters obtained by ETPF lie within the range of an initial ensemble, which is not the case for ETKF. We examine the performance of ETPF and ETKF in a twin experiment setup, where observations of pressure are synthetically created based on the known values of parameters. For a small number of uncertain parameters (one and five) ETPF performs comparably to ETKF in terms of the mean estimation. For a large number of uncertain parameters (2500) ETKF is robust with respect to the initial ensemble, while ETPF is sensitive due to sampling error. Moreover, for the high-dimensional test problem ETPF gives an increase in the root mean square error after data assimilation is performed. This is resolved by applying distance-based localization, which however deteriorates a posterior estimation of the leading mode by largely increasing the variance due to a combination of less varying localized weights, not keeping the imposed bounds on the modes via the Karhunen–Loeve expansion, and the main variability explained by the leading mode. A possible remedy is instead of applying localization to use only leading modes that are well estimated by ETPF, which demands knowledge of which mode to truncate.


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