The Role of Microbial Extracellular Enzymes in the Transformation of Dissolved Organic Matter in Humic Waters

1998 ◽  
pp. 199-257 ◽  
Author(s):  
Uwe Münster ◽  
Henk De Haan
Keyword(s):  
Organic Matter ◽  
Dissolved Organic Matter ◽  
Extracellular Enzymes

scholarly journals DOM degradation by light and microbes along the Yukon River-coastal ocean continuum

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Brice K. Grunert ◽  
Maria Tzortziou ◽  
Patrick Neale ◽  
Alana Menendez ◽  
Peter Hernes
Keyword(s):  
Organic Matter ◽  
Dissolved Organic Matter ◽  
Salinity Gradient ◽  
Coastal Ocean ◽  
Interactive Effects ◽  
The Arctic ◽  
Yukon River ◽  
Spring Freshet ◽  
Dom Composition

AbstractThe Arctic is experiencing rapid warming, resulting in fundamental shifts in hydrologic connectivity and carbon cycling. Dissolved organic matter (DOM) is a significant component of the Arctic and global carbon cycle, and significant perturbations to DOM cycling are expected with Arctic warming. The impact of photochemical and microbial degradation, and their interactive effects, on DOM composition and remineralization have been documented in Arctic soils and rivers. However, the role of microbes, sunlight and their interactions on Arctic DOM alteration and remineralization in the coastal ocean has not been considered, particularly during the spring freshet when DOM loads are high, photoexposure can be quite limited and residence time within river networks is low. Here, we collected DOM samples along a salinity gradient in the Yukon River delta, plume and coastal ocean during peak river discharge immediately after spring freshet and explored the role of UV exposure, microbial transformations and interactive effects on DOM quantity and composition. Our results show: (1) photochemical alteration of DOM significantly shifts processing pathways of terrestrial DOM, including increasing relative humification of DOM by microbes by > 10%; (2) microbes produce humic-like material that is not optically distinguishable from terrestrial humics; and (3) size-fractionation of the microbial community indicates a size-dependent role for DOM remineralization and humification of DOM observed through modeled PARAFAC components of fluorescent DOM, either through direct or community effects. Field observations indicate apparent conservative mixing along the salinity gradient; however, changing photochemical and microbial alteration of DOM with increasing salinity indicate changing DOM composition likely due to microbial activity. Finally, our findings show potential for rapid transformation of DOM in the coastal ocean from photochemical and microbial alteration, with microbes responsible for the majority of dissolved organic matter remineralization.

scholarly journals Phylogenetic and Functional Diversity of Saprolegniales and Fungi Isolated from Temperate Lakes in Northeast Germany

2021 ◽  
Vol 7 (11) ◽  
pp. 968
Author(s):  
Hossein Masigol ◽  
Jason Nicholas Woodhouse ◽  
Pieter van West ◽  
Reza Mostowfizadeh-Ghalamfarsa ◽  
Keilor Rojas-Jimenez ◽  
...  
Keyword(s):  
Organic Matter ◽  
Dissolved Organic Matter ◽  
Enzymatic Activity ◽  
Humic Substances ◽  
Plant Litter ◽  
Freshwater Ecosystems ◽  
Chitinolytic Activity ◽  
Ecological Implications ◽  
Eukaryotic Organisms

The contribution of fungi to the degradation of plant litter and transformation of dissolved organic matter (humic substances, in particular) in freshwater ecosystems has received increasing attention recently. However, the role of Saprolegniales as one of the most common eukaryotic organisms is rarely studied. In this study, we isolated and phylogenetically placed 51 fungal and 62 Saprolegniales strains from 12 German lakes. We studied the cellulo-, lignino-, and chitinolytic activity of the strains using plate assays. Furthermore, we determined the capacity of 10 selected strains to utilize 95 different labile compounds, using Biolog FF MicroPlates™. Finally, the ability of three selected strains to utilize maltose and degrade/produce humic substances was measured. Cladosporium and Penicillium were amongst the most prevalent fungal strains, while Saprolegnia, Achlya, and Leptolegnia were the most frequent Saprolegniales strains. Although the isolated strains assigned to genera were phylogenetically similar, their enzymatic activity and physiological profiling were quite diverse. Our results indicate that Saprolegniales, in contrast to fungi, lack ligninolytic activity and are not involved in the production/transformation of humic substances. We hypothesize that Saprolegniales and fungi might have complementary roles in interacting with dissolved organic matter, which has ecological implications for carbon cycling in freshwater ecosystems.

scholarly journals The role of reactive oxygen species in the degradation of lignin derived dissolved organic matter

2017 ◽  
Vol 208 ◽  
pp. 171-184 ◽  
Author(s):  
Derek C. Waggoner ◽  
Andrew S. Wozniak ◽  
Rose M. Cory ◽  
Patrick G. Hatcher
Keyword(s):  
Reactive Oxygen Species ◽  
Organic Matter ◽  
Dissolved Organic Matter ◽  
Reactive Oxygen ◽  
Oxygen Species

An Overview of Recent Research on the Role of Dissolved Organic Matter on the Environmental Fate of Pesticides in Soils

2021 ◽  
Author(s):  
Aránzazu Peña ◽  
José Antonio Rodríguez-Liébana ◽  
Laura Delgado-Moreno
Keyword(s):  
Organic Matter ◽  
Dissolved Organic Matter ◽  
Environmental Fate

USE OF DISSOLVED ORGANIC MATTER BY MICROORGANISMS: FORMATION OF WATER QUALITY IN A POND OF A HIGH TROPHIC LEVEL

Fisheries ◽  
2020 ◽  
Vol 2020 (5) ◽  
pp. 25-29
Author(s):  
Anatoliy Sadchikov ◽  
Sergey Ostroumov
Keyword(s):  
Water Quality ◽  
Organic Matter ◽  
Organic Carbon ◽  
Dissolved Organic Matter ◽  
Trophic Level ◽  
Aquatic Ecosystem ◽  
High Trophic Level ◽  
Bacterioplankton Community ◽  
Algae And Bacteria

The role of algae and bacteria in the consumption and mineralization of dissolved organic matter (DOM) in a highly trophic aquatic ecosystem was studied. The phytoplankton and bacterioplankton community consumed 60% of added DOM in August and 56% of DOM in September. Of the uptaken DOM, a significant amount of organic carbon was mineralized. In August 42.7% and in September 29% of organic carbon (of the consumed organic matter) were used for respiration.

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