Mangrove crab intestine and habitat sediment microbiomes cooperatively work on carbon and nitrogen cycling

Mangrove ecosystems, where litter and organic components are degraded and converted into detrital materials, support rich coastal fisheries resources. Sesarmid (Grapsidae) crabs, which feed on mangrove litter, play a crucial role in material flow in carbon-rich and nitrogen-limited mangrove ecosystems; however, the process of assimilation and conversion into detritus has not been well studied. In this study, we performed microbiome analyses of intestinal bacteria from three species of mangrove crab and five sediment positions in the mud lobster mounds, including the crab burrow wall, to study the interactive roles of crabs and sediment in metabolism. Metagenome analysis revealed species-dependent intestinal profiles, especially in Neosarmatium smithi, while the sediment microbiome was similar in all positions, albeit with some regional dependency. The microbiome profiles of crab intestines and sediments were significantly different in the MDS analysis based on OTU similarity; however, 579 OTUs (about 70% of reads in the crab intestinal microbiome) were identical between the intestinal and sediment bacteria. In the phenotype prediction, cellulose degradation was observed in the crab intestine. Cellulase activity was detected in both crab intestine and sediment. This could be mainly ascribed to Demequinaceae, which was predominantly found in the crab intestines and burrow walls. Nitrogen fixation was also enriched in both the crab intestines and sediments, and was supported by the nitrogenase assay. Similar to earlier reports, sulfur-related families were highly enriched in the sediment, presumably degrading organic compounds as terminal electron acceptors under anaerobic conditions. These results suggest that mangrove crabs and habitat sediment both contribute to carbon and nitrogen cycling in the mangrove ecosystem via these two key reactions.

Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism

Interactions between Sphagnum (peat moss) and cyanobacteria play critical roles in terrestrial carbon and nitrogen cycling processes. Knowledge of the metabolites exchanged, the physiological processes involved, and the environmental conditions allowing the formation of symbiosis is important for a better understanding of the mechanisms underlying these interactions. In this study, we used a cross-feeding approach with spatially resolved metabolite profiling and metatranscriptomics to characterize the symbiosis between Sphagnum and Nostoc cyanobacteria. A pH gradient study revealed that the Sphagnum–Nostoc symbiosis was driven by pH, with mutualism occurring only at low pH. Metabolic cross-feeding studies along with spatially resolved matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI) identified trehalose as the main carbohydrate source released by Sphagnum, which were depleted by Nostoc along with sulfur-containing choline-O-sulfate, taurine and sulfoacetate. In exchange, Nostoc increased exudation of purines and amino acids. Metatranscriptome analysis indicated that Sphagnum host defense was downregulated when in direct contact with the Nostoc symbiont, but not as a result of chemical contact alone. The observations in this study elucidated environmental, metabolic, and physiological underpinnings of the widespread plant–cyanobacterial symbioses with important implications for predicting carbon and nitrogen cycling in peatland ecosystems as well as the basis of general host-microbe interactions.

Effect of Plastic Mulching on Soil Carbon and Nitrogen Cycling-Related Bacterial Community Structure and Function in a Dryland Spring Maize Field

Plastic mulching, given its positive effects on temperature and water retention, has been widely used to solve water shortages and nutrient scarcity in rainfed agricultural soils. This practice affects the physical and chemical processes of soil, including carbon and nitrogen cycling. However, research into microbe-mediated carbon and nitrogen cycling in soil with plastic mulching is still limited. In this study, the structures and functions of the soil bacterial community in non-mulched spring maize, plastic-mulched spring maize, and bareland fallow in a dryland field on the Loess Plateau in China were analyzed to explore the responses of microbe-mediated carbon and nitrogen cycling to plastic mulching. Results showed that the richness of soil bacteria was the highest in bareland fallow. Plastic mulching increased the diversity and richness of soil bacteria to a certain extent (p > 0.05), and significantly increased the content of microbial biomass nitrogen (MBN) (p < 0.05). Plastic mulching enhanced the total abundances of carbon and nitrogen cycling-related microbes, exhibiting a significant increase in the abundances of Cellvibrio, Bacillus, Methylobacterium and Nitrospira (p < 0.05). Predicted functional analysis revealed 299 metabolic pathways related to carbon and nitrogen cycling, including methane metabolism, carbon fixation in photosynthetic organisms, and nitrogen metabolism. The number of gene families assigned to carbon and nitrogen cycling-related metabolic pathways was higher in plastic mulched than that in non-mulched spring maize. This study demonstrated that plastic mulching enhances the capacity of carbon and nitrogen cycling, revealing its potential in mediating greenhouse gas emissions in the dryland spring maize fields on the Loess Plateau.