Five Novel and four recurrent point mutations in the antithrombin gene causing venous thrombosis

2003 ◽  
Vol 78 (1) ◽  
pp. 79-83 ◽  
Author(s):  
Keiko Nagaizumi ◽  
Hiroshi Inaba ◽  
Kagehiro Amano ◽  
Midori Suzuki ◽  
Morio Arai ◽  
...  
2001 ◽  
Vol 18 (6) ◽  
pp. 546-546 ◽  
Author(s):  
Nadja Bogdanova ◽  
Beate Lemcke ◽  
Arseni Markoff ◽  
Hartmut Pollmann ◽  
Bernd Dworniczak ◽  
...  

2014 ◽  
Vol 46 (10) ◽  
pp. 1060-1062 ◽  
Author(s):  
Carolyn S Lee ◽  
Aparna Bhaduri ◽  
Angela Mah ◽  
Whitney L Johnson ◽  
Alexander Ungewickell ◽  
...  

2012 ◽  
Vol 30 (15_suppl) ◽  
pp. 10560-10560
Author(s):  
Maria E. Arcila ◽  
Khedoudja Nafa ◽  
Jamie E. Chaft ◽  
Natasha Rekhtman ◽  
Maureen Frances Zakowski ◽  
...  

10560 Background: Activating insertion mutations in exon 20 of EGFR are reported in a small subset of lung adenocarcinomas (ADC). In contrast to the classic EGFR mutations, they appear to confer primary resistance to currently approved EGFR tyrosine kinase inhibitors. Their incidence and clinicopathologic features are not well established. Methods: Lung ADCs (n=1500) were screened for major activating mutations in EGFR (exons 19 and 21) and KRAS (exon 2). Negative cases were tested for EGFR exon 20 insertions by a PCR-based sizing assay. Extended testing for additional recurrent point mutations in EGFR, KRAS, BRAF, NRAS, PIK3CA, MEK1 and AKT was performed in all cases by Sequenom mass spectrometry. A subset of cases was also tested for ALK rearrangements by FISH. Results: We identified 32cases withEGFRexon 20 insertions, accounting for 11% of all EGFR mutations. EGFRexon 20 insertions were mutually exclusive with the other genetic alterations tested except for PIK3CA mutations. The incidence was higher among never-smokers (p<0.0001) but there was no association with sex, ethnic origin or stage at diagnosis. Insertions were 3, 6, 9 or 12bp; 9bp insertions were most common (50%, 16/32). Morphologically, 90% of tumors were moderate to poorly differentiated with a predominant mixed ADC phenotype. Conclusions: EGFR exon 20 testing may identify a unique subset of EGFR mutant lung ADCs which is significantly larger than previously reported, making this the third most common type of EGFR mutation after exon 19 deletions and L858R. This population could potentially benefit from alternate targeted therapies, many of which are currently in clinical development.


2001 ◽  
Vol 19 (1) ◽  
pp. 84-84
Author(s):  
Nadja Bogdanova ◽  
Beate Lemcke ◽  
Arseni Markoff ◽  
Hartmut Pollmann ◽  
Bernd Dworniczak ◽  
...  

2018 ◽  
Author(s):  
Paul Ashford ◽  
Camilla S.M. Pang ◽  
Aurelio A. Moya-García ◽  
Tolulope Adeyelu ◽  
Christine A. Orengo

Tumour sequencing identifies highly recurrent point mutations in cancer driver genes, but rare functional mutations are hard to distinguish from large numbers of passengers. We developed a novel computational platform applying a multi-modal approach to filter out passengers and more robustly identify putative driver genes. The primary filter identifies enrichment of cancer mutations in CATH functional families (CATH-FunFams) – structurally and functionally coherent sets of evolutionary related domains. Using structural representatives from CATH-FunFams, we subsequently seek enrichment of mutations in 3D and show that these mutation clusters have a very significant tendency to lie close to known functional sites or conserved sites predicted using CATH-FunFams. Our third filter identifies enrichment of putative driver genes in functionally coherent protein network modules confirmed by literature analysis to be cancer associated.Our approach is complementary to other domain enrichment approaches exploiting Pfam families, but benefits from more functionally coherent groupings of domains. Using a set of mutations from 22 cancers we detect 151 putative cancer drivers, of which 79 are not listed in cancer resources and include recently validated cancer genes EPHA7, DCC netrin-1 receptor and zinc-finger protein ZNF479.


2016 ◽  
Vol 2016 ◽  
pp. 1-6 ◽  
Author(s):  
Karl Haslam ◽  
Stephen E. Langabeer

The presence of acquired mutations within theJAK2,CALR,andMPLgenes in the majority of patients with myeloproliferative neoplasms (MPN) affords the opportunity to utilise these mutations as markers of minimal residual disease (MRD). Reduction of the mutated allele burden has been reported in response to a number of therapeutic modalities including interferon, JAK inhibitors, and allogeneic stem cell transplantation; novel therapies in development will also require assessment of efficacy. Real-time quantitative PCR has been widely adopted for recurrent point mutations with assays demonstrating the specificity, sensitivity, and reproducibility required for clinical utility. More recently, approaches such as digital PCR have demonstrated comparable, if not improved, assay characteristics and are likely to play an increasing role in MRD monitoring. While next-generation sequencing is increasingly valuable as a tool for diagnosis of MPN, its role in the assessment of MRD requires further evaluation.


1991 ◽  
Vol 87 (1) ◽  
pp. 33-40 ◽  
Author(s):  
Charles J. Pruchno ◽  
Daniel H. Cohn ◽  
Gillian A. Wallis ◽  
Marcia C. Willing ◽  
Barbra J. Starman ◽  
...  

1997 ◽  
Vol 134 (1-2) ◽  
pp. 72
Author(s):  
C. Szalai ◽  
B. Halmos ◽  
T. Palicz ◽  
A. Czinner ◽  
L. Romics ◽  
...  

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