The use of microsatellites for detecting DNA polymorphism, genotype identification and genetic diversity in wheat

2000 ◽  
Vol 100 (3-4) ◽  
pp. 584-592 ◽  
Author(s):  
M. Prasad ◽  
R. K. Varshney ◽  
H. S. Balyan ◽  
P. K. Gupta ◽  
J. K. Roy
2000 ◽  
Vol 100 (3-4) ◽  
pp. 584-592 ◽  
Author(s):  
M. Prasad ◽  
R. K. Varshney ◽  
J. K. Roy ◽  
H. S. Balyan ◽  
P. K. Gupta

Plant Disease ◽  
2020 ◽  
Vol 104 (2) ◽  
pp. 323-329
Author(s):  
Yuli Dai ◽  
Lin Gan ◽  
Hongchun Ruan ◽  
Niuniu Shi ◽  
Yixin Du ◽  
...  

Due to the natural destructiveness and persistence of the southern corn leaf blight (SCLB) fungus Bipolaris maydis (Nisikado et Miyake) Shoem, the characterization of B. maydis field isolates is essential to guide the rational distribution of resistant materials in corn-growing regions. In the present study, 102 field isolates collected from seven locations covering the entire region of Fujian Province, China, were assessed for mating type distribution, genetic diversity, and pathogenicity toward local sweet corn cultivars. Mating type detection via polymerase chain reaction indicated that 36.3 and 63.7% of isolates were MAT1-1 and MAT1-2, respectively; more than 80% of these isolates were confirmed using cross assays with known mating type isolates. Thirteen intersimple sequence repeat (ISSR) markers within and among two mating type populations revealed a high level of DNA polymorphism for all combined isolates and between MAT1-1 and MAT1-2 populations. The MAT1-2 population was more diverse based on DNA polymorphism than the MAT1-1 population. The value of GST was 0.0070, ranging from 0.0399 to 0.3044 based on analysis of combined isolates and individual regional populations, respectively, suggesting the presence of genetic differentiation in the two mating type populations from different locations. Pathogenicity assays revealed that both MAT1-1 and MAT1-2 populations were pathogenic to all 11 local sweet corn cultivars tested in this study. The potential of sexual reproduction, existence of genetic diversity in the two mating type populations, and pathogenicity suggest that B. maydis populations have independently clonally adapted under natural field conditions during corn cultivation.


Author(s):  
Sajjad Ahmad ◽  
Rajvinder Kaur ◽  
Mark Lefsrud ◽  
Jaswinder Singh

Retrotransposons diversity has been extensively studied in monocots, but it is not well documented in dicot species. Transposition activity of transposons creates DNA polymorphism and their abundant presence in genomes is making transposons a promising marker system for varietal identification and fingerprinting. In this study, four transposon-based markers (two DNA- and two RNA-transposons) were employed to evaluate the effectiveness of Inter-Retrotransposon Amplified Polymorphism (IRAP) transposon system in assessing genetic diversity in pea germplasm accessions. A total of 28 alleles were detected across the 35 pea accessions with number of alleles per locus ranged from 5 (Mutator) to 9 (Cyclops). RNA transposons produced a higher number of polymorphic alleles (Ogre: 8, Cyclops: 9) than DNA transposon markers (Mutator: 5, MITE: 6). Overall mean PIC value and D values for these transposon markers were 0.810 and 0.817 respectively. Genetic similarity values ranged from 0.143 to 0.823 with a mean similarity value of 0.403. Cluster analysis classified pea genotypes into six major groups that were somewhat consistent with their geographical origins. The molecular analyses differentiated all the 35 accessions and generated higher PIC and D values that can be useful for MAS-based breeding programs in pea.


2016 ◽  
Vol 16 (5) ◽  
pp. 59-68
Author(s):  
Shouguo Tang ◽  
Yong Li ◽  
Zhikun Zhang

Abstract Based on Genetic Algorithm, a pattern recognition approach using fitness to dynamically monitor the sub cultured seeding of kiwifruit is proposed in order to decrease the loss of variant seedlings in tissue culture. By coding, selection, mutation and cross-overing the selected primer pairs of the sub cultured seeding, we simulate the process of optimizing the kiwifruit’s genomic DNA polymorphism. The corresponding fitness values of the primer pairs are evaluated with fitness function for monitor the variation of kiwi’s DNA. The result shows that kiwi’s plantlets can better maintain their genes’ genetic stability for the first to the ninth generation. But from the tenth generation, the fitness values become variation. The results are based on experimentation, which uses optimized AFLP system for analyzing genetic diversity of 75 samples of seventh to eleventh 5 generations of kiwi.


Euphytica ◽  
2012 ◽  
Vol 185 (3) ◽  
pp. 491-510 ◽  
Author(s):  
M. F. Perera ◽  
M. E. Arias ◽  
D. Costilla ◽  
A. C. Luque ◽  
M. B. García ◽  
...  

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