Partitioning of CO2 Incorporation Among Planktonic Microbial Guilds and Estimation of In Situ Specific Growth Rates

2005 ◽  
Vol 50 (2) ◽  
pp. 230-241 ◽  
Author(s):  
Josefina García-Cantizano ◽  
Emilio O. Casamayor ◽  
Josep M. Gasol ◽  
Ricardo Guerrero ◽  
Carlos Pedrós-Alió
Keyword(s):  
Growth Rates ◽  
Specific Growth ◽  
Specific Growth Rates

scholarly journals Picoplankton Diel Variability and Estimated Growth Rates in Epipelagic and Mesopelagic Waters of the Central Red Sea

2021 ◽  
Vol 8 ◽  
Author(s):  
Najwa Al-Otaibi ◽  
Francisca C. García ◽  
Xosé Anxelu G. Morán
Keyword(s):  
Cell Size ◽  
Red Sea ◽  
Growth Rates ◽  
Specific Growth ◽  
Nucleic Acid Content ◽  
Autotrophic Picoplankton ◽  
Heterotrophic Prokaryotes ◽  
Diel Variability ◽  
Specific Growth Rates

The diel variability of the abundance and cell size of picoplanktonic groups in the central Red Sea was monitored every 2 h in situ on 4 occasions (once per season) from 2015 to 2016. We distinguished Prochlorococcus, low (LF-Syn) and high (HF-Syn) fluorescence Synechococcus, small (Speuk) and large (Lpeuk) picoeukaryotes and two groups of heterotrophic prokaryotes of low (LNA) and high (HNA) nucleic acid content. The diel variability in abundance was less marked than in cell size and more apparent in autotrophs than heterotrophs. Specific growth rates were estimated by an empirical relationship from measurements obtained in bottle incubations of surface and deep samples collected in the winter compared with in situ variations in cell size over 24 h. Autotrophic picoplankton groups generally grew faster (0.23–0.77 d–1) than heterotrophic prokaryotes (0.12–0.50 d–1). Surface to 100 m depth-weighted specific growth rates displayed a clear seasonal pattern for Prochlorococcus, with maxima in winter (0.77 ± 0.07 d–1) and minima in fall (0.52 ± 0.07 d–1). The two groups of Synechococcus peaked in spring, with slightly higher growth rates of LF-Syn (0.57 ± 0.04 d–1) than HF-Syn (0.43 ± 0.04 d–1). Speuk and Lpeuk showed different seasonal patterns, with lower values of the former (0.27 ± 0.02 and 0.37 ± 0.04 d–1, respectively). HNA consistently outgrew LNA heterotrophic prokaryotes, with a higher growth in the epipelagic (0–200 m, 0.36 ± 0.03 d–1) than in the mesopelagic (200–700 m, 0.26 ± 0.03 d–1), while no differences were found for LNA cells (0.19 ± 0.03 d–1 and 0.17 ± 0.02 d–1, respectively). With all data pooled, the mean diel abundances of autotrophic picoplankton in the upper epipelagic and of HNA cells in the epipelagic and mesopelagic layers were significantly correlated with the specific growth rates estimated from cell size variations. Our high-resolution sampling dataset suggests that changes in growth rates underlie the noticeable seasonality of picoplankton recently described in these tropical waters.

scholarly journals Molecular Analysis of theIn SituGrowth Rates of Subsurface Geobacter Species

2012 ◽  
Vol 79 (5) ◽  
pp. 1646-1653 ◽  
Author(s):  
Dawn E. Holmes ◽  
Ludovic Giloteaux ◽  
Melissa Barlett ◽  
Milind A. Chavan ◽  
Jessica A. Smith ◽  
...  
Keyword(s):  
Growth Rates ◽  
Ribosomal Proteins ◽  
Specific Growth ◽  
Expression Patterns ◽  
Transcript Abundance ◽  
Metal Reduction ◽  
Content Type ◽  
Specific Growth Rates ◽  
Dissimilatory Metal Reduction

ABSTRACTMolecular tools that can provide an estimate of thein situgrowth rate ofGeobacterspecies could improve understanding of dissimilatory metal reduction in a diversity of environments. Whole-genome microarray analyses of a subsurface isolate ofGeobacter uraniireducens, grown under a variety of conditions, identified a number of genes that are differentially expressed at different specific growth rates. Expression of two genes encoding ribosomal proteins,rpsCandrplL, was further evaluated with quantitative reverse transcription-PCR (qRT-PCR) in cells with doubling times ranging from 6.56 h to 89.28 h. Transcript abundance ofrpsCcorrelated best (r2= 0.90) with specific growth rates. Therefore, expression patterns ofrpsCwere used to estimate specific growth rates ofGeobacterspecies during anin situuranium bioremediation field experiment in which acetate was added to the groundwater to promote dissimilatory metal reduction. Initially, increased availability of acetate in the groundwater resulted in higher expression ofGeobacter rpsC, and the increase in the number ofGeobactercells estimated with fluorescentin situhybridization compared well with specific growth rates estimated from levels ofin situ rpsCexpression. However, in later phases, cell number increases were substantially lower than predicted fromrpsCtranscript abundance. This change coincided with a bloom of protozoa and increased attachment ofGeobacterspecies to solid phases. These results suggest that monitoringrpsCexpression may better reflect the actual rate thatGeobacterspecies are metabolizing and growing duringin situuranium bioremediation than changes in cell abundance.

Specific growth rates of protozooplankton in the marginal ice zone of the central Barents Sea during spring

2000 ◽  
Vol 80 (1) ◽  
pp. 37-44 ◽  
Author(s):  
Benni Winding Hansen ◽  
Frank Jensen
Keyword(s):  
Food Availability ◽  
Growth Rates ◽  
Barents Sea ◽  
Specific Growth ◽  
Open Water ◽  
Marginal Ice Zone ◽  
Fast Ice ◽  
The Mean ◽  
Specific Growth Rates

Protozooplankton growth was measured by incubation in a walk-in cooling room at 5°C of filtered seawater from six stations on a south–north transect from open water through drift ice and into fast ice in the central Barents Sea (72°30′N–76°32′N). Eight species of naked ciliates, two species of tintinnids, seven species of athecate dinoflagellates and nine species of thecate dinoflagellates grew in the 24 and 48 h bottle incubations. Maximum potential mean specific growth rates of 0.84, 0.59, 0.39 and 0.39 d−1, respectively, indicated a hierarchy in growth rates determined by taxonomic differences where growth of naked ciliates > tintinnids > athecate dinoflagellates > thecate dinoflagellates. The mean±SD in situ temperature (4 to −1.8°C) corrected growth rates (Q10=2.8) for the six stations (0.74±0.31, 0.74±0.16, 0.25±0.16, 0.23±0.27 d−1) also suggested a higher growth for ciliates in comparison to dinoflagellates. Additionally, it revealed that the naked ciliates responded to the increased food availability, whereas this was not the case for all other groups of protozooplankton.

scholarly journals Metagenomic growth rate inferences of strains in situ

2020 ◽  
Vol 6 (17) ◽  
pp. eaaz2299
Author(s):  
Akintunde Emiola ◽  
Wei Zhou ◽  
Julia Oh
Keyword(s):  
Growth Rate ◽  
Growth Rates ◽  
Specific Growth ◽  
De Novo ◽  
Microbial Interactions ◽  
Strain Level ◽  
Disease Associations ◽  
Specific Growth Rates ◽  
Reference Strains

We developed a method for strain-level metagenomic estimation of growth rate (SMEG) for inferring growth rates of bacterial subspecies, or strains, from complex metagenomic samples. We applied our method, which is based on both reference strains and de novo approaches, to different gut metagenomic datasets, accurately identifying an outbreak-associated Escherichia coli strain and a previously unidentified association of an Akkermansia muciniphila strain in cancer immunotherapy responders. SMEG resolves strain-specific growth rates from mixtures of commensal or pathogenic strains to provide new insights into microbial interactions and disease associations at the strain level. SMEG is available for download at https://github.com/ohlab/SMEG.

Effects of turbidity on prey consumption and growth in brook trout and implications for bioenergetics modeling

2001 ◽  
Vol 58 (2) ◽  
pp. 386-393 ◽  
Author(s):  
John A Sweka ◽  
Kyle J Hartman
Keyword(s):  
Growth Rates ◽  
Brook Trout ◽  
Specific Growth ◽  
Abiotic Factors ◽  
Foraging Strategies ◽  
Turbid Water ◽  
Daily Consumption ◽  
Consumption Rates ◽  
The Difference ◽  
Specific Growth Rates

Brook trout (Salvelinus fontinalis) were held in an artificial stream to observe the influence of turbidity on mean daily consumption and specific growth rates. Treatment turbidity levels ranged from clear (<3.0 nephelometric turbidity units (NTU)) to very turbid water (> 40 NTU). Observed mean daily specific consumption rates were standardized to the mean weight of all brook trout tested. Turbidity had no significant effect on mean daily consumption, but specific growth rates decreased significantly as turbidity increased. Brook trout in turbid water became more active and switched foraging strategies from drift feeding to active searching. This switch was energetically costly and resulted in lower specific growth rates in turbid water as compared with clear water. Bioenergetics simulations were run to compare observed growth with that predicted by the model. Observed growth values fell below those predicted by the model and the difference increased as turbidity increased. Abiotic factors, such as turbidity, which bring about changes in the activity rates of fish, can have implications for the accuracy of predicted growth by bioenergetics models.

Sex Ratio and Sex-Specific Growth Rates of Immature Green Turtles, Chelonia mydas, in the Southern Bahamas

Copeia ◽  
1992 ◽  
Vol 1992 (4) ◽  
pp. 1098 ◽  
Author(s):  
Alan B. Bolten ◽  
Karen A. Bjorndal ◽  
Janice S. Grumbles ◽  
David W. Owens
Keyword(s):  
Sex Ratio ◽  
Growth Rates ◽  
Specific Growth ◽  
Chelonia Mydas ◽  
Green Turtles ◽  
Specific Growth Rates
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