scholarly journals Selection and characterization of promoters based on genomic approach for the molecular breeding of oleaginous fungus Mortierella alpina 1S-4

2014 ◽  
Vol 60 (3) ◽  
pp. 183-191 ◽  
Author(s):  
Tomoyo Okuda ◽  
Akinori Ando ◽  
Eiji Sakuradani ◽  
Hiroshi Kikukawa ◽  
Nozomu Kamada ◽  
...  
Microbiology ◽  
2011 ◽  
Vol 157 (11) ◽  
pp. 3059-3070 ◽  
Author(s):  
Hongchao Wang ◽  
Bo Yang ◽  
Guangfei Hao ◽  
Yun Feng ◽  
Haiqin Chen ◽  
...  

We characterized the de novo biosynthetic pathway of tetrahydrobiopterin (BH4) in the lipid-producing fungus Mortierella alpina. The BH4 cofactor is essential for various cell processes, and is probably present in every cell or tissue of higher organisms. Genes encoding two copies of GTP cyclohydrolase I (GTPCH-1 and GTPCH-2) for the conversion of GTP to dihydroneopterin triphosphate (H2-NTP), 6-pyruvoyltetrahydropterin synthase (PTPS) for the conversion of H2-NTP to 6-pyruvoyltetrahydropterin (PPH4), and sepiapterin reductase (SR) for the conversion of PPH4 to BH4, were expressed heterologously in Escherichia coli. The recombinant enzymes were produced as His-tagged fusion proteins and were purified to homogeneity to investigate their enzymic activities. Enzyme products were analysed by HPLC and electrospray ionization-MS. Kinetic parameters and other properties of GTPCH, PTPS and SR were investigated. Physiological roles of BH4 in M. alpina are discussed, and comparative analyses between GTPCH, PTPS and SR proteins and other homologous proteins were performed. The presence of two functional GTPCH enzymes has, as far as we are aware, not been reported previously, reflecting the unique ability of this fungus to synthesize both BH4 and folate, using the GTPCH product as a common substrate. To our knowledge, this study is the first to report the comprehensive characterization of a BH4 biosynthesis pathway in a fungus.


2018 ◽  
Vol 83 (4) ◽  
pp. 774-780
Author(s):  
Mohd Fazli Farida Asras ◽  
Yoshimi Shimada ◽  
Hideaki Nagano ◽  
Kei Munesato ◽  
Michiki Takeuchi ◽  
...  

PLoS ONE ◽  
2011 ◽  
Vol 6 (12) ◽  
pp. e28319 ◽  
Author(s):  
Lei Wang ◽  
Wei Chen ◽  
Yun Feng ◽  
Yan Ren ◽  
Zhennan Gu ◽  
...  

2014 ◽  
Vol 60 (3) ◽  
pp. 175-182 ◽  
Author(s):  
Tomoyo Okuda ◽  
Akinori Ando ◽  
Eiji Sakuradani ◽  
Hiroshi Kikukawa ◽  
Nozomu Kamada ◽  
...  

2014 ◽  
Vol 173 (7) ◽  
pp. 1849-1857 ◽  
Author(s):  
Jiayu Yang ◽  
Xinjie Hu ◽  
Huaiyuan Zhang ◽  
Haiqin Chen ◽  
M’balu. R. Kargbo ◽  
...  

Author(s):  
Jeonghwan Seo ◽  
So-Myeong Lee ◽  
Jae-Hyuk Han ◽  
Na-Hyun Shin ◽  
Yoon Kyung Lee ◽  
...  

The inter-subspecific crossing between indica and japonica subspecies in rice have been utilized to improve yield potential in temperate rice. In this study, a comparative study of the genomic regions in the eight high yielding varieties (HYVs) was conducted with those of the four non-HYV varieties. NGS mapping on the Nipponbare reference genome identified a total of 14 common genomic regions of japonica-originated alleles. Interestingly, the HYVs shared the japonica-originated genomic regions on the nine chromosomes, although they were developed from different breeding programs. A panel of 94 varieties was classified into four varietal groups with the 39 SNP markers from 39 genes residing the japonica-originated genomic regions and 16 additional trait-specific SNPs. As expected, the japonica originated genomic regions were present only in JAP and HYV groups with exceptions for Chr4-1 and Chr4-2. The Wx gene located within Chr6-1 was present in HYV and JAP variety groups, while the yield-related genes were conserved as indica alleles in HYVs. The japonica-originated genomic regions and alleles shared by HYVs can be employed in molecular breeding programs for further development of HYVs in rice.


2014 ◽  
Vol 80 (9) ◽  
pp. 2672-2678 ◽  
Author(s):  
G. Hao ◽  
H. Chen ◽  
L. Wang ◽  
Z. Gu ◽  
Y. Song ◽  
...  

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