Microsatellite analysis and marker development in garlic: distribution in EST sequence, genetic diversity analysis, and marker transferability across Alliaceae

2018 ◽  
Vol 293 (5) ◽  
pp. 1091-1106 ◽  
Author(s):  
Karina Barboza ◽  
Vanesa Beretta ◽  
Perla C. Kozub ◽  
Cecilia Salinas ◽  
Mauro M. Morgenfeld ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Analysis ◽  
Diversity Analysis ◽  
Marker Development ◽  
Genetic Diversity Analysis ◽  
Marker Transferability ◽  
Est Sequence

Identification of cold-responsive genes in energycane for their use in genetic diversity analysis and future functional marker development

Plant Science ◽  
2013 ◽  
Vol 211 ◽  
pp. 122-131 ◽  
Author(s):  
Nisar Ahmad Khan ◽  
Renesh Bedre ◽  
Arnold Parco ◽  
Lina Bernaola ◽  
Anna Hale ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Functional Marker ◽  
Diversity Analysis ◽  
Marker Development ◽  
Genetic Diversity Analysis

Ty1-copia retrotransposon-based SSAP marker development and its potential in the genetic study of cucurbits

Genome ◽  
2007 ◽  
Vol 50 (9) ◽  
pp. 802-810 ◽  
Author(s):  
Qunfeng Lou ◽  
Jinfeng Chen
Keyword(s):  
Genetic Diversity ◽  
Diversity Analysis ◽  
Marker Development ◽  
Cucumis Sativus L ◽  
Marker System ◽  
Genetic Diversity Analysis ◽  
Cucumis Species ◽  
Specific Amplification ◽  
Copia Retrotransposon ◽  
Copia Retrotransposons

Three long terminal repeat (LTR) sequences of Ty1-copia retrotransposons were identified in cucumber ( Cucumis sativus L.) and named Tcs 1, Tcs 2, and Tcs 3. A sequence-specific amplification polymorphism (SSAP) marker system based on these LTR sequences displayed a higher level of polymorphism than AFLPs in cucumber. This marker system could also detect loci in other Cucumis species for genetic diversity analysis. The three Tcs LTRs existed within the exons of genes because of the effective amplification band patterns from the cDNA templates. The potential usefulness of the SSAP marker system in studies of the evolution of genes or genomes was verified after exploring loci changes in first and second generations of a synthetic allotetraploid in Cucumis. This study is the first report of the development of a retrotransposon-based marker system and the SSAP technique in cucurbits.

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