Ploidy level and genome size variation in the homosporous ferns Botrychium s.l. (Ophioglossaceae)

2016 ◽  
Vol 302 (5) ◽  
pp. 575-584 ◽  
Author(s):  
Benjamin Dauphin ◽  
Jason Grant ◽  
Patrik Mráz
2020 ◽  
Vol 45 (1) ◽  
pp. 212-218
Author(s):  
Bruno Dematteis ◽  
María S. Ferrucci ◽  
Pablo Ortega-Baes ◽  
Juan P. Coulleri

Abstract—Invasive species must colonize new habitats away from their native range; therefore, factors affecting plant dispersal play a key role in invasion. The ploidy level and genome size (or Cx value) can affect the dispersal traits, physiology, and ecology of invasive species over a few generations, generating individuals that can face fluctuating environments, exploit new ones, and compete with native species. Several studies have demonstrated that invasive species tend to have smaller genomes than their noninvasive congeners, which is explained by the role that the Cx value plays in phenotypic evolution and ecological tolerance. In order to test this hypothesis, we compare the genome size variation in Argentine populations (invasive range) vs. South African populations (native range) of S. madagascariensis. To meet our goals, we estimated the Cx value of invasive populations collected on field trips, while for native populations we considered available published data. We extracted the bioclimatic variables in order to establish the ecological amplitude in which the genome sizes may be distributed. Our results evidenced larger genomes in the invasive range than in the native one. Furthermore, we propose that large genomes of the invasive populations could be mainly explained by the founder genotypes effect and the anthropogenic introduction of this species to Argentina. In addition, we demonstrated that genotypes with big genomes can tolerate different environmental conditions from those of their native range. Therefore, they could present a greater ability for colonizing new environments. The implications and importance of ploidy level in the invasion of S. madagascariensis are discussed.


Crop Science ◽  
2004 ◽  
Vol 44 (1) ◽  
pp. 261 ◽  
Author(s):  
A. Lane Rayburn ◽  
D. P. Biradar ◽  
R. L. Nelson ◽  
R. McCloskey ◽  
K. M. Yeater

2017 ◽  
Vol 4 (9) ◽  
pp. 170862 ◽  
Author(s):  
H. Ritchie ◽  
A. J. Jamieson ◽  
S. B. Piertney

Genome size varies considerably across taxa, and extensive research effort has gone into understanding whether variation can be explained by differences in key ecological and life-history traits among species. The extreme environmental conditions that characterize the deep sea have been hypothesized to promote large genome sizes in eukaryotes. Here we test this supposition by examining genome sizes among 13 species of deep-sea amphipods from the Mariana, Kermadec and New Hebrides trenches. Genome sizes were estimated using flow cytometry and found to vary nine-fold, ranging from 4.06 pg (4.04 Gb) in Paralicella caperesca to 34.79 pg (34.02 Gb) in Alicella gigantea . Phylogenetic independent contrast analysis identified a relationship between genome size and maximum body size, though this was largely driven by those species that display size gigantism. There was a distinct shift in the genome size trait diversification rate in the supergiant amphipod A. gigantea relative to the rest of the group. The variation in genome size observed is striking and argues against genome size being driven by a common evolutionary history, ecological niche and life-history strategy in deep-sea amphipods.


Genome ◽  
2016 ◽  
Vol 59 (6) ◽  
pp. 393-402 ◽  
Author(s):  
Nicholas W. Jeffery ◽  
Kristin Hultgren ◽  
Solomon Tin Chi Chak ◽  
T. Ryan Gregory ◽  
Dustin R. Rubenstein

Although crustaceans vary extensively in genome size, little is known about how genome size may affect the ecology and evolution of species in this diverse group, in part due to the lack of large genome size datasets. Here we investigate interspecific, intraspecific, and intracolony variation in genome size in 39 species of Synalpheus shrimps, representing one of the largest genome size datasets for a single genus within crustaceans. We find that genome size ranges approximately 4-fold across Synalpheus with little phylogenetic signal, and is not related to body size. In a subset of these species, genome size is related to chromosome size, but not to chromosome number, suggesting that despite large genomes, these species are not polyploid. Interestingly, there appears to be 35% intraspecific genome size variation in Synalpheus idios among geographic regions, and up to 30% variation in Synalpheus duffyi genome size within the same colony.


Caryologia ◽  
2015 ◽  
Vol 68 (2) ◽  
pp. 92-96 ◽  
Author(s):  
Oriane Hidalgo ◽  
Joan Vallès ◽  
Angel Romo ◽  
Miguel-Ángel Canela ◽  
Teresa Garnatje

2008 ◽  
Vol 276 (3-4) ◽  
pp. 209-217 ◽  
Author(s):  
Itayguara Ribeiro da Costa ◽  
Marcelo Carnier Dornelas ◽  
Eliana Regina Forni-Martins

BMC Biology ◽  
2021 ◽  
Vol 19 (1) ◽  
Author(s):  
C. P. Stelzer ◽  
J. Blommaert ◽  
A. M. Waldvogel ◽  
M. Pichler ◽  
B. Hecox-Lea ◽  
...  

Abstract Background Eukaryotic genomes are known to display an enormous variation in size, but the evolutionary causes of this phenomenon are still poorly understood. To obtain mechanistic insights into such variation, previous studies have often employed comparative genomics approaches involving closely related species or geographically isolated populations within a species. Genome comparisons among individuals of the same population remained so far understudied—despite their great potential in providing a microevolutionary perspective to genome size evolution. The rotifer Brachionus asplanchnoidis represents one of the most extreme cases of within-population genome size variation among eukaryotes, displaying almost twofold variation within a geographic population. Results Here, we used a whole-genome sequencing approach to identify the underlying DNA sequence differences by assembling a high-quality reference genome draft for one individual of the population and aligning short reads of 15 individuals from the same geographic population including the reference individual. We identified several large, contiguous copy number variable regions (CNVs), up to megabases in size, which exhibited striking coverage differences among individuals, and whose coverage overall scaled with genome size. CNVs were of remarkably low complexity, being mainly composed of tandemly repeated satellite DNA with only a few interspersed genes or other sequences, and were characterized by a significantly elevated GC-content. CNV patterns in offspring of two parents with divergent genome size and CNV patterns in several individuals from an inbred line differing in genome size demonstrated inheritance and accumulation of CNVs across generations. Conclusions By identifying the exact genomic elements that cause within-population genome size variation, our study paves the way for studying genome size evolution in contemporary populations rather than inferring patterns and processes a posteriori from species comparisons.


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