In the long-term process of working, cigarette making machine usually has transmission device running deviation problem. In response to this problem, this paper presents an automatic correction method of cigarette making machine transmission device based on cigarette making machine structure and analysis of running deviation. It divides the whole control process into different stages. when the error signal e is beyond the threshold value, use Fuzzy control; and when it is within the scope of threshold value, use PID control. Apply Simulink and Fuzzy toolbox of Matlab software for simulation experiment, and the experiment results demonstrated that the using of Fuzzy-PID dual mode control system can improve dynamic performance and stable performance of the control system, and can effectively and automatically correct cigarette making machine transmission device.