Phylogenetic diversity of Calonectria ilicicola causing Cylindrocladium black rot of peanut and red crown rot of soybean in southern China

2017 ◽  
Vol 83 (5) ◽  
pp. 273-282 ◽  
Author(s):  
Yunpeng Gai ◽  
Qiaowen Deng ◽  
Xinglong Chen ◽  
Mingfang Guan ◽  
Xiang Xiao ◽  
...  
Plant Disease ◽  
2010 ◽  
Vol 94 (4) ◽  
pp. 485-485 ◽  
Author(s):  
M. Guan ◽  
R. Pan ◽  
X. Gao ◽  
D. Xu ◽  
Q. Deng ◽  
...  

In October 2006, occurrence of a disease on soybean (Glycine max) was observed in Guangdong Province of southern China with symptoms resembling red crown rot (3,4). Reddish brown lesions girdled the basal stems with numerous reddish orange perithecia on the lesion surface. Roots became black and rotted and whole plants wilted and died. More recently, outbreaks of this disease were observed in several counties in Guangdong. Disease incidence reached as much as 80% on cv. Huaxia 3 in some fields, causing severe yield losses. Isolation was made from the edge of lesions on potato dextrose agar at 25°C. The fungus produced white, aerial mycelia and a burnt orange-to-dark brown submerged growth. Conidiophores were borne laterally on a stipe, terminating in a hyaline, globose vesicle measuring 4.0 to 13.0 μm in diameter. After branching from the stipe, the conidiophore continued to develop by forming two to three single-celled branches. These cells might give rise to two or three shorter branches (14.8 to 36.9 μm long) and phialides. The phialides were doliform, nonseptate, and measured 7.4 to 19.7 × 3.7 to 4.9 μm. Conidia were hyaline, cylindrical with one to three septa (mostly three septa), and measured 54.1 to 76.3 × 4.9 to 7.4 μm. Perithecia were orange to red, subglobose to oval or globose, 212.1 to 454.5 μm high, and 111.1 to 333.3 μm wide. Asci were hyaline, clavate, thin walled, long stalked, measured 121.0 to 200.8 × 11.5 to 25.6 μm, and each contained eight ascospores that became aggregated in the upper half of the ascus at maturity. The ascospores were hyaline, fusoid to falcate with one to three septa (mostly with one septum), constricted slightly at the septum, and measured 29.5 to 73.8 × 4.9 to 9.8 μm. The fungus was identified as Cylindrocladium parasiticum (teleomorph Calonectria ilicicola) (1,2). The beta-tubulin gene fragment sequences of three isolates were obtained (one sequence being GenBank Accession No. GU073284) and comparisons with GenBank showed 99 to 100% similarity with Calonectria ilicicola (EF159730 and AY725643). Pathogenicity was confirmed by inoculation of 2-week-old seedlings of cv. Huaxia 3 in plastic pots (10 × 9 cm) by drenching with a conidia suspension (105 conidia per ml). All inoculated plants showed similar red crown rot symptoms on stem bases and roots 1 week after inoculation. C. parasiticum was reisolated from the diseased plants, and many orange-to-red perithecia of Calonectria ilicicola were formed on the lesions 3 weeks after inoculation. This pathogen may pose a serious threat to >300,000 ha of soybean production as well as >300,000 ha of peanut production in Guangdong Province. It has been previously reported in Jiangsu Province in eastern China (3) and Yunnan Province in western China (4). References: (1) D. K. Bell, and E. K. Sobers. Phytopathology 56:1361, 1966. (2) P. W. Crous et al. Mycol. Res. 97:889, 1993. (3) J. Y. Gai et al. Soybean Sci. (in Chinese) 11:113, 1992. (4) Z. H. Ma et al. Plant Pathol. 53:537, 2004.


Plant Disease ◽  
2012 ◽  
Vol 96 (4) ◽  
pp. 586-586 ◽  
Author(s):  
Y. Gai ◽  
Q. Deng ◽  
R. Pan ◽  
X. Chen ◽  
M. Deng

In July 2010, a serious disease of peanut (Arachis hypogaea) resembling Cylindrocladium black rot (CBR) was found in Longnan County, Jiangxi Province, China. Symptoms included chlorotic, yellowish and blighted leaves, and wilting of the plants. Taproots and hypocotyls were blackened and rotted. Clusters of reddish orange spherical fruiting bodies appeared in the lesions present on basal stems, pegs, pods, and roots of peanut. Disease incidence reached as much as 50% in some patches of the field. Plants with symptoms were sampled from fields. Microscopic examination revealed that the reddish orange, spherical fruiting bodies were the perithecia and measured 461.6 (337.5 to 609.4) × 395.5 (309.4 to 496.9) μm. With gentle pressure, asci and ascospores were exuded from perithecia. The asci were hyaline, thin walled, and long stalked. Ascospores were hyaline, falcate with one septum, and measured 43.5 (27.3 to 54.5) × 5.6 (4.1 to 6.8) μm with a length/width (L/W) ratio of 7.8 ± 1.3. A fungus with white-to-pale buff border mycelia and yellowish brown pigment was consistently isolated from the edge of basal stem lesions on potato dextrose agar at 25°C. Mycelia grew at temperatures ranging from 8 to 32°C and the optimum was 25 to 26°C. To determine the species, single-conidial isolates of the fungus were cultured on carnation leaf agar for 7 days at 25°C and 12 h of light/dark conditions. Conidia were hyaline, cylindrical with one to three septa (mostly three septa), and measured 49.3 (27.3 to 70.9) × 5.9 (4.1 to 6.8) μm with L/W ratio of 8.4 ± 1.6. Vesicles were globose and measured 5.5 to 10.9 μm in diameter. The fungus was identified as Cylindrocladium parasiticum (teleomorph Calonectria ilicicola) (1,2). A PCR assay was conducted on one representative isolate (JXLN32) by analyzing multilocus sequences of the TUB2 (coding β-tubulin protein), ACT (coding actin), and CaM gene (coding calmodulin protein) and were amplified and sequenced using the primers reported by Crous et al. (3). Sequences of the studied DNA regions were submitted to GenBank (Accession Nos. TUB2: JF429649; ACT: JQ070809; and CaM: JQ070808). BLAST searches with the existing sequences in GenBank showed that there was 99 to 100% identity with the existing sequences of C. ilicicola (GenBank Accession Nos. TUB2: AY725643; ACT: GQ280446; and CaM: GQ267402). To complete Koch's postulates, inoculum was prepared by mixing the microsclerotia (MS) suspension of the isolate (JXLN32) with soil at a proportion of 10 MS per g of soil. Ten replicate plastic pots containing five peanut seeds (cv. Yueyou 7) each were planted and placed in a glasshouse at 25 ± 2°C. The same number of peanut seeds was used as an uninoculated control. Typical basal stem and roots rot symptoms of CBR were observed in 2 months and C. parasiticum was reisolated from these inoculated diseased plants. No symptoms were detected on the control plants. To our knowledge, this is the first finding of Cylindrocladium black rot in Jiangxi Province, which is the main peanut-producing area in China. The disease has been previously reported in Guangdong Province in southern China but is not known elsewhere (4). Because of its ability to spread through seed and soil and its destructive potential, this pathogen may pose a serious threat to peanut production in China. References: (1) D. K. Bell and E. K. Sobers. Phytopathology 56:1361, 1966. (2) P. W. Crous et al. Mycol. Res. 97:889, 1993. (3) P. W. Crous et al. Stud. Mycol. 50:415, 2004. (4) R. Pan et al. Plant Pathol. 58:1176, 2009.


Plant Disease ◽  
2020 ◽  
Vol 104 (3) ◽  
pp. 979
Author(s):  
H. H. Liu ◽  
Y. M. Shen ◽  
H. X. Chang ◽  
M. N. Tseng ◽  
Y. H. Lin

2006 ◽  
Vol 12 (3) ◽  
pp. 178-184 ◽  
Author(s):  
Seong-Woo Park ◽  
Hong-Sik Kim ◽  
Sun-Hee Woo ◽  
Heong-Kwon Shim ◽  
Heung-Tae Kim

Plant Disease ◽  
2004 ◽  
Vol 88 (6) ◽  
pp. 613-619 ◽  
Author(s):  
P. U. Kuruppu ◽  
R. W. Schneider ◽  
J. S. Russin

Field studies were conducted in 1994, 1995, and 1996 to determine the effects of planting date, cultivar susceptibility, and soil pathogen population on soybean root colonization by Calonectria ilicicola and subsequent development of red crown rot. Early season colonization of roots was important for red crown rot symptom development. Symptom development in the more susceptible cultivar, Sharkey, was reduced following delayed planting and remained low in the less susceptible cultivar, Cajun, regardless of planting date. Taproot colonization was positively correlated with inoculum density during all three growing seasons but was strongest in 1994. Also, lateral root colonization correlated positively with inoculum density in 1994, the only year in which foliar symptoms were detected. A substantial decrease in inoculum density in 1995, along with reduced soybean root colonization, were attributed to high soil temperatures and probably low rainfall recorded during that summer. The effect of soybean plant age on root colonization was examined by exposing plants to the pathogen at different ages. Soybean plants were most susceptible to C. ilicicola during the first week after seedling emergence. By the second week, susceptibility was reduced by nearly half, and it remained near that level for the next several weeks.


Author(s):  
Hsien-Hao Liu ◽  
Jie Wang ◽  
Ping-Hu Wu ◽  
Mei-Yeh Jade Lu ◽  
Jeng-Yi Li ◽  
...  

Calonectria ilicicola (ana. Cylindrocladium parasiticum) is a soilborne plant pathogenic fungus with a broad host range, and it can cause red crown rot of soybean and Cylindrocladium black rot of peanut, which has become an emerging threat to crop production worldwide. Limited molecular studies have focused on Calonectria ilicicola and one of the possible difficulties is the lack of genomic resource. This study presents the first high quality and near-completed genome of C. ilicicola using the Oxford Nanopore GridION sequencing platform. A total of 16 contigs were assembled and the genome of C. ilicicola isolate F018 was estimated to have 11 chromosomes. Currently, the C. ilicicola F018 genome represents the most contiguous assembly, which has the lowest contig number and the highest contig N50 among all Calonectria genome resources. Putative protein-coding sequences and secretory proteins were estimated to be 17,308 and 1,930 in the C. ilicicola F018 genome, respectively; and the prediction was close to other plant pathogenic fungi such as Fusarium species within the Nectriaceae family. The availability of this high-quality genome resource is expected to facilitate research on fungal biology and genetics of C. ilicicola, and to support the understanding on pathogen virulence and disease management.


2020 ◽  
Vol 86 (5) ◽  
pp. 363-375
Author(s):  
Hajime Akamatsu ◽  
Naoya Fujii ◽  
Takaaki Saito ◽  
Akira Sayama ◽  
Hideki Matsuda ◽  
...  

Plant Disease ◽  
2012 ◽  
Vol 96 (4) ◽  
pp. 583-583 ◽  
Author(s):  
R. Pan ◽  
Q. Deng ◽  
D. Xu ◽  
C. Ji ◽  
M. Deng ◽  
...  

During late July and early August of 2010, a serious disease of peanut (Arachis hypogaea L.) resembling Cylindrocladium black rot (CBR) was found in Longyan City, Fujian Province of Eastern China. Aboveground symptoms were chlorosis and yellowing of leaves, a black rot of the basal stem and pegs, and wilting of the vines. Underground plant parts (including pods, pegs, taproots, and hypocotyls) were blackened and rotted. Orange-to-reddish spherical fruiting bodies appeared on the lesions of the basal stems and pegs of peanut. Disease incidence was approximately 20%. A fungus was consistently isolated from the edge of lesions on potato dextrose agar (PDA) amended with streptomycin and incubated at 25°C. The fungus produced white-to-pale buff mycelia with a yellowish brown pigment. Optimum growth of the fungus on PDA was at 25 to 30°C. Conidiophores were borne laterally on a stipe that terminated in a hyaline, globose vesicle measuring 5.5 × 10.9 μm in diameter. Conidia were hyaline, cylindrical, rounded at both ends, slightly wider at the base than at the apex, with one to three septa (mostly one septa), and measured 27.3 to 70.9 × 4.1 to 8.2 μm. Orange-to-reddish perithecia were readily formed in old cultures. The perithecia were subglobose to oval or obovate and measured 215.6 to 609.4 × 309.4 to 496.9 μm. The asci were hyaline, clavate, thin walled, long stalked, with each containing eight ascospores. Ascospores were hyaline, falcate, had one septum, and measured 27.3 to 54.5 × 4.1 to 6.8 μm. The fungus was identified as Cylindrocladium parasiticum Crous, M.J. Wingfield, & Alfenas (teleomorph Calonectria ilicicola) (1,2). The beta-tubulin gene fragment was amplified using the T1/Bt2b primers (3) and sequenced. The sequences of three isolates (GenBank Accession Nos. JF343965, JF429656, and JF429657), when compared with existing sequences in GenBank, had 95 to 99% sequence identity with Calonectria ilicicola (GenBank Accession Nos. AY725643 and AY725639). Pathogenicity tests were conducted by first culturing the fungus on wheat kernels for 2 weeks. Inoculated kernels were then used as inoculum and mixed with sterilized soil in a proportion of 1:20 by weight in plastic pots (10 × 9 cm). Noninoculated wheat kernels were mixed with sterilized soil in the same proportion and served as the control. Two-week-old peanut seedlings (cv. Yueyou No. 7) were transplanted into inoculated or noninoculated pots. There were five plants per pot and each treatment was replicated four times. The plants were incubated in a greenhouse at 25 ± 2°C. All of the treated plants exhibited typical basal stem and root rot symptoms of CBR 2 weeks after inoculation, while all of the control plants remained healthy. C. parasiticum was reisolated from the diseased plants. To our knowledge, this is the first report of CBR on peanut in Fujian Province in Eastern China. The disease has been previously reported in Guangdong Province in Southern China but is not known elsewhere (4). This pathogen may pose a serious threat to peanut production in China, where peanut is an important crop. References: (1) D. K. Bell and E. K. Sobers. Phytopathology 56:1361, 1966. (2) P. W. Crous et al. Mycol. Res. 97:889, 1993. (3) P. W. Crous et al. Can. J. Bot. 77:1813, 1999. (4) R. Pan et al. Plant Pathol. 58:1176, 2009.


Plant Disease ◽  
2019 ◽  
Vol 103 (7) ◽  
pp. 1777-1777
Author(s):  
N. Kleczewski ◽  
D. Plewa ◽  
C. Kangas ◽  
E. Phillippi ◽  
V. Kleczewski

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