Post-delisting genetic monitoring reveals population subdivision along river and reservoir localities of the endemic Concho water snake (Nerodia harteri paucimaculata)

Author(s):  
Mary J. Janecka ◽  
Jan E. Janecka ◽  
Aaron M. Haines ◽  
Alexa Michaels ◽  
Charles D. Criscione
1981 ◽  
Vol 46 (04) ◽  
pp. 747-748
Author(s):  
V M Srivastava ◽  
B Dube ◽  
R K Dube ◽  
G P Agarwal

SummaryThe generation of prothrombin-activator (thromboplastin) in water snake (Natrix piscator) is clearly delayed, Compared to a mammalian system, but the final activity is well comparable to that in man, when homologous sources of “phospholipid” (erythrocyte-lysate) and of substrate plasma are employed in one stage “thromboplastin generation test”. The use of heterologous source of either of the above reagents resulted in significantly longer clotting times; hence the need for homologous source of above reagents in the test is emphasized for comparative studies on animal haemostasis.


Author(s):  
Aparna . Veluru ◽  
Kanwar P. Singh ◽  
Namita . . ◽  
Sapna . Panwar ◽  
Gayacharan . . ◽  
...  

Roses are the most important commercial ornamental plants grown for flowers, perfumery and nutraceutical compounds. Commercially cultivated roses (Rosa × hybrida L.) are complex interspecific hybrids probably derived from 8-10 wild species among the large diversity of 130-200 species in genus Rosa. Wild germplasm is a primary source of variability and plays a major role in improving existing varieties by broadening their genetic base. In the present investigation, we have utilized the previously identified SSR primers for studying the diversity among 148 selected rose genotypes, including wild species and cultivated varieties of Indian and exotic origin. A total of 88 alleles was scored using 30 polymorphic loci; they produced average 2.9±1 alleles per locus. Polymorphism information content (PIC) values for different SSR loci ranged from 0.08 to 0.8 with a mean value of 0.5±0.2. The neighbor-joining tree generated based on Nei’s (1978) genetic distance values grouped the population into three major clusters. Cluster-I and II consists of all modern rose cultivars (Rosa × hybrida L.) originated from India and cluster-III consists of all exotic cultivars, wild species and a few cultivars from India. STRUCTURE analysis based on microsatellite allelic data, partitioned the total rose genotypes into four different sub-populations with some individual genotypes having genomic admixture. Population subdivision estimates, FST between different subpopulations ranged from 0.01-0.15 indicates low to moderate level of divergence existing among the rose cultivars and germplasm. Population differentiation in rose cultivars and wild species corresponds to their geographical origin and lineages. Analysis of molecular variance (AMOVA) results revealed that 83.12 % of the variance was accounted for by within sub-groups followed by significant levels of variation among the populations (10.42%) and least variance (6.46%) was noticed among individuals within groups.


Genetics ◽  
1994 ◽  
Vol 136 (2) ◽  
pp. 685-692 ◽  
Author(s):  
Y X Fu

Abstract A new estimator of the essential parameter theta = 4Ne mu from DNA polymorphism data is developed under the neutral Wright-Fisher model without recombination and population subdivision, where Ne is the effective population size and mu is the mutation rate per locus per generation. The new estimator has a variance only slightly larger than the minimum variance of all possible unbiased estimators of the parameter and is substantially smaller than that of any existing estimator. The high efficiency of the new estimator is achieved by making full use of phylogenetic information in a sample of DNA sequences from a population. An example of estimating theta by the new method is presented using the mitochondrial sequences from an American Indian population.


Genetics ◽  
1986 ◽  
Vol 113 (4) ◽  
pp. 939-965
Author(s):  
Eldredge Bermingham ◽  
John C Avise

ABSTRACT Restriction fragment length polymorphisms in mitochondrial DNA (mtDNA) were used to reconstruct evolutionary relationships of conspecific populations in four species of freshwater fish—Amia calva, Lepomis punctatus, L. gulosus, and L. microlophus. A suite of 14-17 endonucleases was employed to assay mtDNAs from 305 specimens collected from 14 river drainages extending from South Carolina to Louisiana. Extensive mtDNA polymorphism was observed within each assayed species. In both phenograms and Wagner parsimony networks, mtDNA clones that were closely related genetically were usually geographically contiguous. Within each species, major mtDNA phylogenetic breaks also distinguished populations from separate geographic regions, demonstrating that dispersal and gene flow have not been sufficient to override geographic influences on population subdivision.—Importantly, there were strong patterns of congruence across species in the geographic placements of the mtDNA phylogenetic breaks. Three major boundary regions were characterized by concentrations of phylogenetic discontinuities, and these zones agree well with previously described zoogeographic boundaries identified by a different kind of data base—distributional limits of species—suggesting that a common set of historical factors may account for both phenomena. Repeated episodes of eustatic sea level change along a relatively static continental morphology are the likely causes of several patterns of drainage isolation and coalescence, and these are discussed in relation to the genetic data.—Overall, results exemplify the positive role that intraspecific genetic analyses may play in historical zoogeographic reconstruction. They also point out the potential inadequacies of any interpretations of population genetic structure that fail to consider the influences of history in shaping that structure.


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