Testing of Low-cost Digital Microfluidic Biochips with Non-Regular Array Layouts

2011 ◽  
Vol 28 (2) ◽  
pp. 243-255 ◽  
Author(s):  
Yang Zhao ◽  
Krishnendu Chakrabarty ◽  
Bhargab B. Bhattacharya
2019 ◽  
Vol 28 (05) ◽  
pp. 1950076
Author(s):  
Chaowei Wan ◽  
Xiaodao Chen ◽  
Dongbo Liu

Microfluidic biochips are extensively utilized in biochemistry procedures due to their low cost, high precision and efficiency when compared to traditional laboratory procedures. Recent, computer-aided design (CAD) techniques enable a high performance in digital microfluidic biochip design. A key part in digital microfluidic biochip CAD design is the biochip placement procedure which determines the physical location for biological reactions during the physical design. For the biochip physical design, multiple objects need to be considered, such as the size of the chip and the total operation time. In this paper, a multi-objective optimization is proposed based on Markov decision processes (MDPs). The proposed method is evaluated on a set of standard biochip benchmarks. Compared to existing works, experimental results show that the total operation time, the capacity for routing and the chip size can be optimized simultaneously.


2021 ◽  
Vol 26 (6) ◽  
pp. 1-22
Author(s):  
Chen Jiang ◽  
Bo Yuan ◽  
Tsung-Yi Ho ◽  
Xin Yao

Digital microfluidic biochips (DMFBs) have been a revolutionary platform for automating and miniaturizing laboratory procedures with the advantages of flexibility and reconfigurability. The placement problem is one of the most challenging issues in the design automation of DMFBs. It contains three interacting NP-hard sub-problems: resource binding, operation scheduling, and module placement. Besides, during the optimization of placement, complex constraints must be satisfied to guarantee feasible solutions, such as precedence constraints, storage constraints, and resource constraints. In this article, a new placement method for DMFB is proposed based on an evolutionary algorithm with novel heuristic-based decoding strategies for both operation scheduling and module placement. Specifically, instead of using the previous list scheduler and path scheduler for decoding operation scheduling chromosomes, we introduce a new heuristic scheduling algorithm (called order scheduler) with fewer limitations on the search space for operation scheduling solutions. Besides, a new 3D placer that combines both scheduling and placement is proposed where the usage of the microfluidic array over time in the chip is recorded flexibly, which is able to represent more feasible solutions for module placement. Compared with the state-of-the-art placement methods (T-tree and 3D-DDM), the experimental results demonstrate the superiority of the proposed method based on several real-world bioassay benchmarks. The proposed method can find the optimal results with the minimum assay completion time for all test cases.


Author(s):  
Qin Wang ◽  
Weiqing Ji ◽  
Zeyan Li ◽  
Haena Cheong ◽  
Oh-Sun Kwon ◽  
...  

2011 ◽  
Vol 23 (4) ◽  
pp. 518-529 ◽  
Author(s):  
Bogdan Paşaniuc ◽  
Robert Garfinkel ◽  
Ion Măndoiu ◽  
Alex Zelikovsky

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