Low-Power Non-Binary LDPC Decoder Design via Adaptive Message Length Control Exploiting Domain-Specific Information

2020 ◽  
Vol 93 (1) ◽  
pp. 11-23 ◽  
Author(s):  
Wenjie Huang ◽  
Lei Wang
Author(s):  
Ittetsu TANIGUCHI ◽  
Ayataka KOBAYASHI ◽  
Keishi SAKANUSHI ◽  
Yoshinori TAKEUCHI ◽  
Masaharu IMAI

2011 ◽  
Vol 33 (5) ◽  
pp. 1229-1233 ◽  
Author(s):  
Ming-ying Lu ◽  
Li-li Zhang ◽  
Guo-yu Wang ◽  
Hong-sheng Zhang ◽  
Liang-wei Li

2021 ◽  
Vol 17 (2) ◽  
pp. 1-27
Author(s):  
Morteza Hosseini ◽  
Tinoosh Mohsenin

This article presents a low-power, programmable, domain-specific manycore accelerator, Binarized neural Network Manycore Accelerator (BiNMAC), which adopts and efficiently executes binary precision weight/activation neural network models. Such networks have compact models in which weights are constrained to only 1 bit and can be packed several in one memory entry that minimizes memory footprint to its finest. Packing weights also facilitates executing single instruction, multiple data with simple circuitry that allows maximizing performance and efficiency. The proposed BiNMAC has light-weight cores that support domain-specific instructions, and a router-based memory access architecture that helps with efficient implementation of layers in binary precision weight/activation neural networks of proper size. With only 3.73% and 1.98% area and average power overhead, respectively, novel instructions such as Combined Population-Count-XNOR , Patch-Select , and Bit-based Accumulation are added to the instruction set architecture of the BiNMAC, each of which replaces execution cycles of frequently used functions with 1 clock cycle that otherwise would have taken 54, 4, and 3 clock cycles, respectively. Additionally, customized logic is added to every core to transpose 16×16-bit blocks of memory on a bit-level basis, that expedites reshaping intermediate data to be well-aligned for bitwise operations. A 64-cluster architecture of the BiNMAC is fully placed and routed in 65-nm TSMC CMOS technology, where a single cluster occupies an area of 0.53 mm 2 with an average power of 232 mW at 1-GHz clock frequency and 1.1 V. The 64-cluster architecture takes 36.5 mm 2 area and, if fully exploited, consumes a total power of 16.4 W and can perform 1,360 Giga Operations Per Second (GOPS) while providing full programmability. To demonstrate its scalability, four binarized case studies including ResNet-20 and LeNet-5 for high-performance image classification, as well as a ConvNet and a multilayer perceptron for low-power physiological applications were implemented on BiNMAC. The implementation results indicate that the population-count instruction alone can expedite the performance by approximately 5×. When other new instructions are added to a RISC machine with existing population-count instruction, the performance is increased by 58% on average. To compare the performance of the BiNMAC with other commercial-off-the-shelf platforms, the case studies with their double-precision floating-point models are also implemented on the NVIDIA Jetson TX2 SoC (CPU+GPU). The results indicate that, within a margin of ∼2.1%--9.5% accuracy loss, BiNMAC on average outperforms the TX2 GPU by approximately 1.9× (or 7.5× with fabrication technology scaled) in energy consumption for image classification applications. On low power settings and within a margin of ∼3.7%--5.5% accuracy loss compared to ARM Cortex-A57 CPU implementation, BiNMAC is roughly ∼9.7×--17.2× (or 38.8×--68.8× with fabrication technology scaled) more energy efficient for physiological applications while meeting the application deadline.


Author(s):  
Yufei Li ◽  
Xiaoyong Ma ◽  
Xiangyu Zhou ◽  
Pengzhen Cheng ◽  
Kai He ◽  
...  

Abstract Motivation Bio-entity Coreference Resolution focuses on identifying the coreferential links in biomedical texts, which is crucial to complete bio-events’ attributes and interconnect events into bio-networks. Previously, as one of the most powerful tools, deep neural network-based general domain systems are applied to the biomedical domain with domain-specific information integration. However, such methods may raise much noise due to its insufficiency of combining context and complex domain-specific information. Results In this paper, we explore how to leverage the external knowledge base in a fine-grained way to better resolve coreference by introducing a knowledge-enhanced Long Short Term Memory network (LSTM), which is more flexible to encode the knowledge information inside the LSTM. Moreover, we further propose a knowledge attention module to extract informative knowledge effectively based on contexts. The experimental results on the BioNLP and CRAFT datasets achieve state-of-the-art performance, with a gain of 7.5 F1 on BioNLP and 10.6 F1 on CRAFT. Additional experiments also demonstrate superior performance on the cross-sentence coreferences. Supplementary information Supplementary data are available at Bioinformatics online.


2004 ◽  
Vol 02 (01) ◽  
pp. 215-239 ◽  
Author(s):  
TOLGA CAN ◽  
YUAN-FANG WANG

We present a new method for conducting protein structure similarity searches, which improves on the efficiency of some existing techniques. Our method is grounded in the theory of differential geometry on 3D space curve matching. We generate shape signatures for proteins that are invariant, localized, robust, compact, and biologically meaningful. The invariancy of the shape signatures allows us to improve similarity searching efficiency by adopting a hierarchical coarse-to-fine strategy. We index the shape signatures using an efficient hashing-based technique. With the help of this technique we screen out unlikely candidates and perform detailed pairwise alignments only for a small number of candidates that survive the screening process. Contrary to other hashing based techniques, our technique employs domain specific information (not just geometric information) in constructing the hash key, and hence, is more tuned to the domain of biology. Furthermore, the invariancy, localization, and compactness of the shape signatures allow us to utilize a well-known local sequence alignment algorithm for aligning two protein structures. One measure of the efficacy of the proposed technique is that we were able to perform structure alignment queries 36 times faster (on the average) than a well-known method while keeping the quality of the query results at an approximately similar level.


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