ATAC-seq method applied to embryonic germ cells and neural stem cells from mouse: Practical tips and modifications

2020 ◽  
pp. 371-386
Author(s):  
Soichiro Yamanaka ◽  
Yusuke Kishi ◽  
Haruhiko Siomi
Stem Cells ◽  
2006 ◽  
Vol 24 (2) ◽  
pp. 212-220 ◽  
Author(s):  
Lee Turnpenny ◽  
Cosma M. Spalluto ◽  
Rebecca M. Perrett ◽  
Marie O'Shea ◽  
Karen Piper Hanley ◽  
...  

2007 ◽  
Vol 7 (6) ◽  
pp. 714-721 ◽  
Author(s):  
Eleonora Sorrentino ◽  
Valeria Nazzicone ◽  
Donatella Farini ◽  
Luisa Campagnolo ◽  
Massimo De Felici

2017 ◽  
Vol 114 (31) ◽  
pp. 8289-8294 ◽  
Author(s):  
Yohei Hayashi ◽  
Kei Otsuka ◽  
Masayuki Ebina ◽  
Kaori Igarashi ◽  
Asuka Takehara ◽  
...  

Primordial germ cells (PGCs), undifferentiated embryonic germ cells, are the only cells that have the ability to become gametes and to reacquire totipotency upon fertilization. It is generally understood that the development of PGCs proceeds through the expression of germ cell-specific transcription factors and characteristic epigenomic changes. However, little is known about the properties of PGCs at the metabolite and protein levels, which are directly responsible for the control of cell function. Here, we report the distinct energy metabolism of PGCs compared with that of embryonic stem cells. Specifically, we observed remarkably enhanced oxidative phosphorylation (OXPHOS) and decreased glycolysis in embryonic day 13.5 (E13.5) PGCs, a pattern that was gradually established during PGC differentiation. We also demonstrate that glycolysis and OXPHOS are important for the control of PGC reprogramming and specification of pluripotent stem cells (PSCs) into PGCs in culture. Our findings about the unique metabolic property of PGCs provide insights into our understanding of the importance of distinct facets of energy metabolism for switching PGC and PSC status.


2006 ◽  
Vol 24 (5) ◽  
pp. 304-313 ◽  
Author(s):  
Candace Kerr ◽  
John Gearhart ◽  
Aaron Elliott ◽  
Peter Donovan

2006 ◽  
Vol 18 (2) ◽  
pp. 209 ◽  
Author(s):  
D. S. Martins ◽  
N. Z. Saraiva ◽  
J. M. Garcia ◽  
C. E. Ambrósio ◽  
M. Zatz ◽  
...  

Dogs represent excellent models to test different approaches before use for human therapy. Studies with animal models have suggested that the transplant of stem cells may have success in the treatment of degenerative diseases such as Parkinson's disease, diabetes, Duchenne muscular dystrophy (DMD), and acquired lesions. Embryonic stem cells are pluripotent and therefore have the potential to form all tissues. Our research aims to contribute to the treatment of DMD through the isolation and identification of embryonic germ cells and the development of the methodology of cellular differentiation for future transplantation into dystrophic dogs. Mongrel female dogs were ovariehysterectomized between 25 and 30 days of pregnancy. For recovery of embryos, the excised uterine horns were flushed with heparinized PBS. Samples collected from somites near the mesonephros area of four embryos recovered at 22 to 24 days of pregnancy and designated as A1 through A4 were dissociated and placed in culture. Isolated embryonic cells were allowed to plate onto monolayers of canine fibroblast cells. Flow cytometry was used to identify CD34+ markers. Isolated compact colonies of embryonic germ cells were seen growing around tissue fragments at 7 days of culture and remained in the undifferentiated stage until approximately 21 days in culture. At 14 days of explant, cell colonies were analyzed by flow cytometry. Cells from the A2 embryos contained the highest number of CD34+ cells, whereas no cells from A4 embryos showed specificity for the marker. A small proportion (2.12%) of cells from embryos A1 and A3 showed specificity for the CD34 marker. A quantity of A2 embryo cells that had maintained stem cell characteristics were frozen for future studies. Our results suggest that although spontaneous differentiation occurred, a small population of cells maintain the characteristics of stem cells. We are currently trying to improve the methodology to maintain cells undifferentiated for longer periods and to better control the specific differentiation process.


Blood ◽  
2008 ◽  
Vol 112 (11) ◽  
pp. 4754-4754
Author(s):  
Ting Zou ◽  
Bei Yang ◽  
Mei Ling Mi ◽  
Ming Di Xiong ◽  
Xia Ying Lu ◽  
...  

Abstract One of the most devastating adverse effects of cancer treatments including bone marrow transplantation is damage to the reproductive system, which in young girls and women less than 40 years old is frequently associated with premature menopause and infertility, although adult bone marrow stem cells (BMSCs) are able to generate cells of all three germ layers under appropriate experimental conditions. These outcomes seem to be a result of cytotoxic effects on oocytes housed within the ovaries. Recent studies showed that female BMSCs (FBMSC) could differentiate into granulosa cells (GCs) and oocyte and form primordial follicles in ovary after FBMSCs transplantation and might have repaired chemotherapy-induced damage to the niche or the ovarian stroma. The formation of new primordial follicles in adult mammal ovaries is a controversial issue because some new studies have concluded that all offspring were derived from the recipient germ line after FBMSCs transplantation. To explore the effects of FBMSCs on female reproductive function, the experiment is to investigate whether adult female BMSCs are able to differentiate into Follicle-stimulating hormone receptor (FSHR, a GCs specific marker in the ovary cells) positive GCs and stra8 (stimulated by retinoic acid gene 8, a specific expression gene in mammalian germ cell’s transition from mitosis to meiosis) expression oogonia in vitro induced by all-trans retinoic acid (RA). Methods: FBMSCs were separated from adult female SD rat bone marrow. FBMSCs were cultured in DMEM supplemented with 10% fetal bovine serum. All experiments were performed using FBMSCs from the 2nd passage adherent cell fraction. FBMSCs were cultured above medium with 10−6 M RA or without RA(control group). RT-PCR was performed to detect the expression of Stra8 mRNA and FSHR mRNA, Western blot and immunocytochemistry staining was utilized to examine the expression of FSHR in FBMSCs cultured with RA. Results: Some of the FBMSCs were large and round and had a oocyte-like cell appearance 7 days after induction culture. Some FBMSCs were FSHR positive by immunocytochemistry 3 days after induction differentiation, the FSHR+ cells were small or middle and round and were found in small clusters. Following longer in culture(from day 5 to day 7), the most of FSHR+ cells gradually became larger. The FBMSCs also expressed FSHR mRNA by RT-PCR and FSHR protein by Western Blotting 7days after induction differentiation. In control group, the FBMSC still kept undifferentiated relatively elongated or spindle-shaped cells that they were FSHR negative. The FBMSCs expressed Stra8 mRNA by RT-PCR 7days after induction differentiation, the RA-regulated gene specifically expressed in premeiotic germ cells and a marker of the stem cells transdifferentiated into germ cells. In control group, the FBMSCs were stra8 negative. Recent reports indicated that Stra8 was expressed in embryonic germ cells of ovary in mice and was not expressed after birth in ovary, it implied that there was not oocyte production in postnatal ovary. Our results is not support the view and suggest that adult FBMSCs could be able to generate oocytes. Conclusions: These results suggest that RA could induce FBMSC to differentiate into GC-like cells and oogonia-like cells in vitro. Stra8 is not only expressed in embryonic germ cells of ovary, but also can be expressed in adult FBMSC induced by RA. Adult FBMSCs contain pluripotent stem cells that could differentiate into germ cells and gonadal somatic cells. It is a point to investigate the function of GC-like cells derived from FBMSCs and the differentiation capable of oogonia-like cells derived from FBMSCs in vitro in a further step of the research work.


Sign in / Sign up

Export Citation Format

Share Document