Ion Channels in the Cell Membrane: Structure, Function, and Modeling

Author(s):  
D. Wu ◽  
J. Cui
Mathematics ◽  
2021 ◽  
Vol 9 (4) ◽  
pp. 323
Author(s):  
Martina Nicoletti ◽  
Letizia Chiodo ◽  
Alessandro Loppini

Mechanosensing is a key feature through which organisms can receive inputs from the environment and convert them into specific functional and behavioral outputs. Mechanosensation occurs in many cells and tissues, regulating a plethora of molecular processes based on the distribution of forces and stresses both at the cell membrane and at the intracellular organelles levels, through complex interactions between cells’ microstructures, cytoskeleton, and extracellular matrix. Although several primary and secondary mechanisms have been shown to contribute to mechanosensation, a fundamental pathway in simple organisms and mammals involves the presence of specialized sensory neurons and the presence of different types of mechanosensitive ion channels on the neuronal cell membrane. In this contribution, we present a review of the main ion channels which have been proven to be significantly involved in mechanotransduction in neurons. Further, we discuss recent studies focused on the biological mechanisms and modeling of mechanosensitive ion channels’ gating, and on mechanotransduction modeling at different scales and levels of details.


2019 ◽  
Vol 34 (1) ◽  
pp. 1665-1678 ◽  
Author(s):  
Yu Larpin ◽  
Hervé Besançon ◽  
Mircea‐Ioan Iacovache ◽  
Victoriia S. Babiychuk ◽  
Eduard B. Babiychuk ◽  
...  

Author(s):  
Fedor Medzihradsky ◽  
Edward I. Cullen

2017 ◽  
pp. 565-596 ◽  
Author(s):  
Bruce Alberts ◽  
Alexander Johnson ◽  
Julian Lewis ◽  
David Morgan ◽  
Martin Raff ◽  
...  

Genetics ◽  
1983 ◽  
Vol 104 (2) ◽  
pp. 235-240
Author(s):  
James H Meade ◽  
Thomas R Manney

ABSTRACT Phenethyl alcohol inhibits the growth of many microorganisms. It is believed that the growth inhibition is mediated by its effect on the cell membrane. Differences between sensitive and resistant strains are suggested to be due to alterations in membrane structure. We report that, in some strains, an unexpected relationship exists between auxotrophy for tryptophan, tyrosine and phenylalanine and sensitivity to phenethyl alcohol.


1984 ◽  
Vol 246 (5) ◽  
pp. F710-F724 ◽  
Author(s):  
A. B. Maunsbach ◽  
E. L. Boulpaep

The functional properties of the proximal tubule in the salamander Ambystoma tigrinum have been well characterized but its ultrastructure has not been examined. We therefore analyzed the qualitative and quantitative ultrastructure of the proximal tubule in this species as a basis for structure-function correlations. In addition, a comparative study between species was performed between Ambystoma and Necturus. In Ambystoma the basal cell membrane but not the lateral cell membrane has a highly elaborate organization and is greatly amplified at the basal cell surface. Therefore, the bulk of the basolateral membrane does not face the lateral intercellular space but faces a basal extracellular labyrinth immediately adjacent to the peritubular space. We suggest that this intraepithelial compartment may serve as a site for solute-solvent interactions. The morphometric comparative analysis provides quantitative estimates of tubule dimensions, volume of cells and extracellular channels, areas of luminal, lateral, and basal cell membranes as well as averaged dimensions of the lateral intercellular spaces. Structure-function correlations show that when certain functional parameters are normalized on the basis of ultrastructural rather than epithelial dimensions the interspecies variability decreases.


Cells ◽  
2019 ◽  
Vol 9 (1) ◽  
pp. 73
Author(s):  
Jinsung Kim ◽  
Juyeon Ko ◽  
Chansik Hong ◽  
Insuk So

The study of the structure–function relationship of ion channels has been one of the most challenging goals in contemporary physiology. Revelation of the three-dimensional (3D) structure of ion channels has facilitated our understanding of many of the submolecular mechanisms inside ion channels, such as selective permeability, voltage dependency, agonist binding, and inter-subunit multimerization. Identifying the structure–function relationship of the ion channels is clinically important as well since only such knowledge can imbue potential therapeutics with practical possibilities. In a sense, recent advances in the understanding of the structure–relationship of transient receptor potential canonical (TRPC) channels look promising since human TRPC channels are calcium-permeable, non-selective cation channels expressed in many tissues such as the gastrointestinal (GI) tract, kidney, heart, vasculature, and brain. TRPC channels are known to regulate GI contractility and motility, pulmonary hypertension, right ventricular hypertrophy, podocyte injury, seizure, fear, anxiety-like behavior, and many others. In this article, we tried to elaborate recent findings of Cryo-EM (cryogenic-electron microscopy) based structural information of TRPC 4 and 5 channels and domain-specific functions of the channel, such as G-protein mediated activation mechanism, extracellular modification of the channel, homo/hetero-tetramerization, and pharmacological gating mechanisms.


NANO ◽  
2015 ◽  
Vol 10 (02) ◽  
pp. 1550025 ◽  
Author(s):  
Seyed Hanif Mahboobi ◽  
Alireza Taheri ◽  
Hossein Nejat Pishkenari ◽  
Ali Meghdari ◽  
Mahya Hemmat

Determination of an injection condition which is minimally invasive to the cell membrane is of great importance in drug and gene delivery. For this purpose, a series of molecular dynamics (MD) simulations are conducted to study the penetration of a carbon nanotube (CNT) into a pure POPC cell membrane under various injection velocities, CNT tilt angles and chirality parameters. The simulations are nonequilibrium and all-atom. The force and stress exerted on the nanotube, deformation of the lipid bilayer, and strain of the CNT atoms are inspected during the simulations. We found that a lower nanotube velocity results in successfully entering the membrane with minimum disruption in the CNT and the lipid bilayer, and CNT's chirality distinctly affects the results. Moreover, it is shown that the tilt angle of the CNT influences the nanotube's buckling and may result in destroying the membrane structure during the injection process.


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