scholarly journals A high-throughput differential filtration assay to screen and select detergents for membrane proteins

2010 ◽  
Vol 407 (1) ◽  
pp. 1-11 ◽  
Author(s):  
James M. Vergis ◽  
Michael D. Purdy ◽  
Michael C. Wiener
2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Vadim Kotov ◽  
Kim Bartels ◽  
Katharina Veith ◽  
Inokentijs Josts ◽  
Udaya K. Tiruttani Subhramanyam ◽  
...  

2011 ◽  
Vol 28 (7-8) ◽  
pp. 445-453 ◽  
Author(s):  
Mads Gabrielsen ◽  
Frank Kroner ◽  
Isobel Black ◽  
Neil W. Isaacs ◽  
Andrew J. Roe ◽  
...  

2021 ◽  
Author(s):  
Robert D Healey ◽  
Shibom Basu ◽  
Anne-Sophie Humm ◽  
Cedric Leyrat ◽  
Xiaojing Cong ◽  
...  

Membrane proteins are central to many pathophysiological processes yet remain very difficult to analyze at a structural level. Moreover, high-throughput structure-based drug discovery has not yet been exploited for membrane proteins due to lack of automation. Here, we present a facile and versatile platform for in meso membrane protein crystallization, enabling rapid atomic structure determination at both cryogenic and room temperature and in a single support. We apply this approach to two human integral membrane proteins, which allowed us to capture different conformational states of intramembrane enzyme-product complexes and analyze the structural dynamics of the ADIPOR2 integral membrane protein. Finally, we demonstrate an automated pipeline combining high-throughput microcrystal soaking, automated laser-based harvesting and serial crystallography enabling screening of small molecule libraries with membrane protein crystals grown in meso. This approach brings badly needed automation for this important class of drug targets and enables high-throughput structure-based ligand discovery with membrane proteins.


2019 ◽  
Vol 116 (3) ◽  
pp. 191a ◽  
Author(s):  
Vadim Kotov ◽  
Oliver Vesper ◽  
Maria Garcia Alai ◽  
Christian Loew ◽  
Thomas C. Marlovits

2008 ◽  
Vol 36 (1) ◽  
pp. 27-32 ◽  
Author(s):  
Mark S.P. Sansom ◽  
Kathryn A. Scott ◽  
Peter J. Bond

An understanding of the interactions of membrane proteins with a lipid bilayer environment is central to relating their structure to their function and stability. A high-throughput approach to prediction of membrane protein interactions with a lipid bilayer based on coarse-grained Molecular Dynamics simulations is described. This method has been used to develop a database of CG simulations (coarse-grained simulations) of membrane proteins (http://sbcb.bioch.ox.ac.uk/cgdb). Comparison of CG simulations and AT simulations (atomistic simulations) of lactose permease reveals good agreement between the two methods in terms of predicted lipid headgroup contacts. Both CG and AT simulations predict considerable local bilayer deformation by the voltage sensor domain of the potassium channel KvAP.


2017 ◽  
Vol 13 (9) ◽  
pp. 4003-4011 ◽  
Author(s):  
Stefan Doerr ◽  
Toni Giorgino ◽  
Gerard Martínez-Rosell ◽  
João M. Damas ◽  
Gianni De Fabritiis

2020 ◽  
Vol 10 (12) ◽  
pp. 4649-4663 ◽  
Author(s):  
Joseph M. Varberg ◽  
Jennifer M. Gardner ◽  
Scott McCroskey ◽  
Snehabala Saravanan ◽  
William D. Bradford ◽  
...  

The nuclear envelope (NE) contains a specialized set of integral membrane proteins that maintain nuclear shape and integrity and influence chromatin organization and gene expression. Advances in proteomics techniques and studies in model organisms have identified hundreds of proteins that localize to the NE. However, the function of many of these proteins at the NE remains unclear, in part due to a lack of understanding of the interactions that these proteins participate in at the NE membrane. To assist in the characterization of NE transmembrane protein interactions we developed an arrayed library of integral and peripheral membrane proteins from the fission yeast Schizosaccharomyces pombe for high-throughput screening using the split-ubiquitin based membrane yeast two -hybrid system. We used this approach to characterize protein interactions for three conserved proteins that localize to the inner nuclear membrane: Cut11/Ndc1, Lem2 and Ima1/Samp1/Net5. Additionally, we determined how the interaction network for Cut11 is altered in canonical temperature-sensitive cut11-ts mutants. This library and screening approach is readily applicable to characterizing the interactomes of integral membrane proteins localizing to various subcellular compartments.


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