scholarly journals Quantification of Interphase Chromatin Dynamics in Fission Yeast

2015 ◽  
Vol 108 (2) ◽  
pp. 538a
Author(s):  
Takeshi Sugawara ◽  
Kenta Masuda ◽  
Jun-ichi Uewaki ◽  
Akinori Awazu ◽  
Hiraku Nishimori ◽  
...  
2013 ◽  
Vol 110 (39) ◽  
pp. 15555-15560 ◽  
Author(s):  
A. Zidovska ◽  
D. A. Weitz ◽  
T. J. Mitchison

2017 ◽  
Vol 112 (3) ◽  
pp. 374a
Author(s):  
Jonah Eaton ◽  
Alexandra Zidovska

2014 ◽  
Vol 54 (supplement1-2) ◽  
pp. S194
Author(s):  
Takeshi Sugawara ◽  
Shota Masuda ◽  
Jun-ichi Uewaki ◽  
Akinori Awazu ◽  
Hiraku Nishimori ◽  
...  

1997 ◽  
Vol 137 (7) ◽  
pp. 1459-1468 ◽  
Author(s):  
James R. Abney ◽  
Bryan Cutler ◽  
Misty L. Fillbach ◽  
Daniel Axelrod ◽  
Bethe A. Scalettar

Translational dynamics of chromatin in interphase nuclei of living Swiss 3T3 and HeLa cells was studied using fluorescence microscopy and fluorescence recovery after photobleaching. Chromatin was fluorescently labeled using dihydroethidium, a membrane-permeant derivative of ethidium bromide. After labeling, a laser was used to bleach small (∼0.4 μm radius) spots in the heterochromatin and euchromatin of cells of both types. These spots were observed to persist for >1 h, implying that interphase chromatin is immobile over distance scales ⩾0.4 μm. Over very short times (<1 s), a partial fluorescence recovery within the spots was observed. This partial recovery is attributed to independent dye motion, based on comparison with results obtained using ethidium homodimer-1, which binds essentially irreversibly to nucleic acids. The immobility observed here is consistent with chromosome confinement to domains in interphase nuclei. This immobility may reflect motion-impeding steric interactions that arise in the highly concentrated nuclear milieu or outright attachment of the chromatin to underlying nuclear substructures, such as nucleoli, the nuclear lamina, or the nuclear matrix.


2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Natalja Strelnikova ◽  
Nora Sauter ◽  
Manuel Guizar-Sicairos ◽  
Michael Göllner ◽  
Ana Diaz ◽  
...  

2022 ◽  
Vol 23 (2) ◽  
pp. 968
Author(s):  
Matthew W. Faber ◽  
Tommy V. Vo

As part of a complex network of genome control, long regulatory RNAs exert significant influences on chromatin dynamics. Understanding how this occurs could illuminate new avenues for disease treatment and lead to new hypotheses that would advance gene regulatory research. Recent studies using the model fission yeast Schizosaccharomyces pombe (S. pombe) and powerful parallel sequencing technologies have provided many insights in this area. This review will give an overview of key findings in S. pombe that relate long RNAs to multiple levels of chromatin regulation: histone modifications, gene neighborhood regulation in cis and higher-order chromosomal ordering. Moreover, we discuss parallels recently found in mammals to help bridge the knowledge gap between the study systems.


2020 ◽  
Vol 21 (1) ◽  
Author(s):  
Yasutaka Kakui ◽  
Christopher Barrington ◽  
David J. Barry ◽  
Tereza Gerguri ◽  
Xiao Fu ◽  
...  

Abstract Background Structural maintenance of chromosomes (SMC) complexes are central organizers of chromatin architecture throughout the cell cycle. The SMC family member condensin is best known for establishing long-range chromatin interactions in mitosis. These compact chromatin and create mechanically stable chromosomes. How condensin contributes to chromatin organization in interphase is less well understood. Results Here, we use efficient conditional depletion of fission yeast condensin to determine its contribution to interphase chromatin organization. We deplete condensin in G2-arrested cells to preempt confounding effects from cell cycle progression without condensin. Genome-wide chromatin interaction mapping, using Hi-C, reveals condensin-mediated chromatin interactions in interphase that are qualitatively similar to those observed in mitosis, but quantitatively far less prevalent. Despite their low abundance, chromatin mobility tracking shows that condensin markedly confines interphase chromatin movements. Without condensin, chromatin behaves as an unconstrained Rouse polymer with excluded volume, while condensin constrains its mobility. Unexpectedly, we find that condensin is required during interphase to prevent ongoing transcription from eliciting a DNA damage response. Conclusions In addition to establishing mitotic chromosome architecture, condensin-mediated long-range chromatin interactions contribute to shaping chromatin organization in interphase. The resulting structure confines chromatin mobility and protects the genome from transcription-induced DNA damage. This adds to the important roles of condensin in maintaining chromosome stability.


Author(s):  
Atsuko Shirai ◽  
Akihisa Matsuyama ◽  
Yoko Yashiroda ◽  
Ritsuko Arai ◽  
Minoru Yoshida

10.2741/1013 ◽  
2003 ◽  
Vol 8 (6) ◽  
pp. s149-155 ◽  
Author(s):  
Vasily V Ogryzko

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