Examining the Mechanical Properties of Copper Binding Azurin using Single Molecule Force Spectroscopy and Steered Molecular Dynamics

Biophysical Journal ◽

10.1016/j.bpj.2015.11.2652 ◽

2016 ◽

Vol 110 (3) ◽

pp. 496a ◽

Author(s):

Anju Yadav ◽

Sanjoy Paul ◽

Ravindra Venkatramani ◽

Sri Rama ◽

Koti Ainavarapu

Keyword(s):

Mechanical Properties ◽

Molecular Dynamics ◽

Single Molecule ◽

Force Spectroscopy ◽

Steered Molecular Dynamics ◽

Copper Binding ◽

Single Molecule Force Spectroscopy

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Exploring the Folding Pattern of a Polymer Chain in a Single Crystal by Combining Single-Molecule Force Spectroscopy and Steered Molecular Dynamics Simulations

Langmuir ◽

10.1021/la305157p ◽

2013 ◽

Vol 29 (12) ◽

pp. 3853-3857 ◽

Author(s):

Yu Song ◽

Wei Feng ◽

Kai Liu ◽

Peng Yang ◽

Wenke Zhang ◽

...

Keyword(s):

Molecular Dynamics ◽

Single Crystal ◽

Molecular Dynamics Simulations ◽

Polymer Chain ◽

Single Molecule ◽

Force Spectroscopy ◽

Steered Molecular Dynamics ◽

Single Molecule Force Spectroscopy ◽

Folding Pattern ◽

Dynamics Simulations

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Using steered molecular dynamics simulations and single-molecule force spectroscopy to guide the rational design of biomimetic modular polymeric materials

Polymer ◽

10.1016/j.polymer.2008.06.047 ◽

2008 ◽

Vol 49 (18) ◽

pp. 3892-3901 ◽

Author(s):

Dora L. Guzmán ◽

Jason T. Roland ◽

Harindar Keer ◽

Yen Peng Kong ◽

Thorsten Ritz ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Single Molecule ◽

Rational Design ◽

Force Spectroscopy ◽

Polymeric Materials ◽

Steered Molecular Dynamics ◽

Single Molecule Force Spectroscopy ◽

Dynamics Simulations

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Single Molecule Force Spectroscopy and Steered Molecular Dynamics Simulations Reveal the Mechanical Design of the Third FnIII Domain of Tenascin-C

Biophysical Journal ◽

10.1016/j.bpj.2008.12.3389 ◽

2009 ◽

Vol 96 (3) ◽

pp. 641a

Author(s):

Qing Peng ◽

Shulin Zhuang ◽

Meijia Wang ◽

Yi Cao ◽

Yuanai Khoo ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Single Molecule ◽

Mechanical Design ◽

Force Spectroscopy ◽

Steered Molecular Dynamics ◽

Single Molecule Force Spectroscopy ◽

The Third ◽

Fniii Domain ◽

Dynamics Simulations

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Mechanisms of Nanonewton Mechanostability in a Protein Complex Revealed by Molecular Dynamics Simulations and Single-Molecule Force Spectroscopy

Journal of the American Chemical Society ◽

10.1021/jacs.9b06776 ◽

2019 ◽

Vol 141 (37) ◽

pp. 14752-14763 ◽

Author(s):

Rafael C. Bernardi ◽

Ellis Durner ◽

Constantin Schoeler ◽

Klara H. Malinowska ◽

Bruna G. Carvalho ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Single Molecule ◽

Protein Complex ◽

Force Spectroscopy ◽

Single Molecule Force Spectroscopy ◽

Dynamics Simulations

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Low Folding Cooperativity of Hp35 Revealed by Single-Molecule Force Spectroscopy and Molecular Dynamics Simulation

Biophysical Journal ◽

10.1016/j.bpj.2012.03.028 ◽

2012 ◽

Vol 102 (8) ◽

pp. 1944-1951 ◽

Author(s):

Chunmei Lv ◽

Cheng Tan ◽

Meng Qin ◽

Dawei Zou ◽

Yi Cao ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Single Molecule ◽

Force Spectroscopy ◽

Dynamics Simulation ◽

Single Molecule Force Spectroscopy

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Detection of Membrane Mechanical Properties and Endocytosis by Single Molecule Force Spectroscopy

Membrane Biophysics ◽

10.1007/978-981-10-6823-2_4 ◽

2017 ◽

pp. 91-115

Author(s):

Yuping Shan

Keyword(s):

Mechanical Properties ◽

Single Molecule ◽

Force Spectroscopy ◽

Single Molecule Force Spectroscopy ◽

Membrane Mechanical Properties

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Effect of chemical cross-linking on the mechanical properties of elastomeric peptides studied by single molecule force spectroscopy

Journal of Biomechanics ◽

10.1016/j.jbiomech.2011.05.028 ◽

2011 ◽

Vol 44 (11) ◽

pp. 2118-2122 ◽

Author(s):

Francesca Sbrana ◽

Marina Lorusso ◽

Claudio Canale ◽

Brigida Bochicchio ◽

Massimo Vassalli

Keyword(s):

Mechanical Properties ◽

Single Molecule ◽

Force Spectroscopy ◽

Cross Linking ◽

Single Molecule Force Spectroscopy ◽

Chemical Cross Linking

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Pseudo-peptide amyloid-β blocking inhibitors: molecular dynamics and single molecule force spectroscopy study

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics ◽

10.1016/j.bbapap.2017.07.022 ◽

2017 ◽

Vol 1865 (11) ◽

pp. 1707-1718 ◽

Author(s):

B. Mehrazma ◽

M. Robinson ◽

S.K.A. Opare ◽

A. Petoyan ◽

J. Lou ◽

...

Keyword(s):

Molecular Dynamics ◽

Single Molecule ◽

Force Spectroscopy ◽

Spectroscopy Study ◽

Single Molecule Force Spectroscopy

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Deciphering the Mechanical Properties of Type III Secretion System EspA Protein by Single Molecule Force Spectroscopy

Langmuir ◽

10.1021/acs.langmuir.8b01198 ◽

2018 ◽

Vol 34 (21) ◽

pp. 6261-6270 ◽

Author(s):

Hila Nadler ◽

Lihi Shaulov ◽

Yossi Blitsman ◽

Moran Mordechai ◽

Jürgen Jopp ◽

...

Keyword(s):

Mechanical Properties ◽

Single Molecule ◽

Type Iii Secretion ◽

Type Iii Secretion System ◽

Force Spectroscopy ◽

Secretion System ◽

Single Molecule Force Spectroscopy ◽

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Low Folding Cooperativity of HP35 Revealed by Single Molecule Force Spectroscopy and Molecular Dynamics Simulation

Biophysical Journal ◽

10.1016/j.bpj.2011.11.321 ◽

2012 ◽

Vol 102 (3) ◽

pp. 53a-54a

Author(s):

Chunmei Lv ◽

Cheng Tan ◽

Meng Qin ◽

Yi Cao ◽

Wei Wang

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Single Molecule ◽

Force Spectroscopy ◽

Dynamics Simulation ◽

Single Molecule Force Spectroscopy

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