Covalent Complex Model of DNA Topoisomerase and DNA for Molecular Dynamics Simulation

Purushottam Tiwari; Prem Chapagain; Yuk-Ching Tse-Dinh; Aykut Uren

doi:10.1016/j.bpj.2017.11.1898

Covalent Complex Model of DNA Topoisomerase and DNA for Molecular Dynamics Simulation

Biophysical Journal ◽

10.1016/j.bpj.2017.11.1898 ◽

2018 ◽

Vol 114 (3) ◽

pp. 340a

Author(s):

Purushottam Tiwari ◽

Prem Chapagain ◽

Yuk-Ching Tse-Dinh ◽

Aykut Uren

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Complex Model ◽

Dynamics Simulation ◽

Dna Topoisomerase ◽

Covalent Complex

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2P021 Evaluation of protein complex model using molecular dynamics simulation with the solution theory in the energy representation(01A. Protein: Structure,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s162_3 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S162

Author(s):

Kazuhiro Takemura ◽

Nobuyuki Matsubayasi ◽

Akio Kitao

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Molecular Dynamics Simulation ◽

Protein Complex ◽

Complex Model ◽

Dynamics Simulation ◽

Solution Theory

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Characterization of a CPI-Lexitropsin Conjugate-Oligonucleotide Covalent Complex by 1H NMR and Restrained Molecular Dynamics Simulation

Journal of the American Chemical Society ◽

10.1021/ja00140a004 ◽

1995 ◽

Vol 117 (35) ◽

pp. 8917-8925 ◽

Cited By ~ 15

Author(s):

Nancy L. Fregeau ◽

Yuqiang Wang ◽

Richard T. Pon ◽

William A. Wylie ◽

J. William Lown

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

1H Nmr ◽

Dynamics Simulation ◽

Covalent Complex ◽

Restrained Molecular Dynamics

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Rotational dynamics and velocity segregation in plastic KCIO4: a molecular dynamics simulation

Molecular Physics ◽

10.1080/00268979809482256 ◽

1998 ◽

Vol 93 (5) ◽

pp. 703-711

Author(s):

F. AFFOUARD ◽

PH. DEPONDT

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Rotational Dynamics ◽

Dynamics Simulation

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Molecular dynamics simulation of the dynamics of supercooled silica

Philosophical Magazine B ◽

10.1080/014186398259374 ◽

1998 ◽

Vol 77 (2) ◽

pp. 297-303 ◽

Cited By ~ 24

Author(s):

J. Horbach, W. Kob, K. Binder

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Dynamics Simulation

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ACPD ligands for glutamic receptors : conformational analysis by NMR spectroscopy and molecular dynamics. Simulation in water of glutamic acid analogues containing a cyclopentane ring

Journal de Chimie Physique ◽

10.1051/jcp/1995921809 ◽

1995 ◽

Vol 92 ◽

pp. 1809-1812

Author(s):

V Larue ◽

J Gharby-Benarous ◽

D Todeschi ◽

F Acher ◽

R Azerad ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Nmr Spectroscopy ◽

Conformational Analysis ◽

Glutamic Acid ◽

Dynamics Simulation ◽

Cyclopentane Ring

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Nonequilibrium effects in electron-ion strongly coupled plasmas. Molecular dynamics simulation

Journal de Physique IV (Proceedings) ◽

10.1051/jp4:2000545 ◽

2000 ◽

Vol 10 (PR5) ◽

pp. Pr5-255-Pr5-258 ◽

Cited By ~ 5

Author(s):

G. E. Norman ◽

A. A. Valuev ◽

I. A. Valuev

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Dynamics Simulation ◽

Strongly Coupled ◽

Strongly Coupled Plasmas ◽

Nonequilibrium Effects ◽

Coupled Plasmas

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A molecular dynamics simulation for an ODIC phase. - III. Analysis of the correlation functions

Journal de Physique ◽

10.1051/jphys:01987004805082100 ◽

1987 ◽

Vol 48 (5) ◽

pp. 821-835 ◽

Cited By ~ 6

Author(s):

Ph. Buchet ◽

R.M. Pick

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Correlation Functions ◽

Dynamics Simulation ◽

Phase Iii

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ROLE OF THE CONSERVATIVE INTERHELICAL HYDROGEN BOND SER74-TRP158 AT THE CHOLESTEROL BINDING SITE IN THE CONFORMATIONAL STABILITY OF THE b2-ADRENERGIC RECEPTOR: MOLECULAR DYNAMICS SIMULATION

Журнал структурной химии ◽

10.15372/jsc20170224 ◽

2017 ◽

Keyword(s):

Molecular Dynamics ◽

Hydrogen Bond ◽

Molecular Dynamics Simulation ◽

Binding Site ◽

Adrenergic Receptor ◽

Conformational Stability ◽

Dynamics Simulation ◽

Cholesterol Binding

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SCALE INHIBITION OF SODIUM CARBOXYMETHYL CELLULOSE AT DIFFERENT GROWTH STAGES BASED ON MOLECULAR DYNAMICS SIMULATION

Heat Transfer Research ◽

10.1615/heattransres.2020033226 ◽

2020 ◽

Vol 51 (16) ◽

pp. 1455-1464

Author(s):

Yu Zhao ◽

Shanshan He ◽

Zhiming Xu ◽

Bingbing Wang

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Carboxymethyl Cellulose ◽

Dynamics Simulation ◽

Sodium Carboxymethyl Cellulose ◽

Growth Stages ◽

Scale Inhibition ◽

Different Growth Stages

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MOLECULAR DYNAMICS SIMULATION OF NANOSCALE ARGON DROPLET MOTION ON SOLID SURFACE INDUCED BY TEMPERATURE GRADIENT

Equipment ◽

10.1615/ihtc13.p8.160 ◽

2006 ◽

Author(s):

Dr. Akira Murata ◽

Dr. Sadanari Mochizuki

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Temperature Gradient ◽

Solid Surface ◽

Dynamics Simulation ◽

Droplet Motion

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