Copy number, loss of heterozygosity and amplification detection in formalin-fixed paraffin-embedded melanocytic lesions using molecular inversion probes

Molecular Inversion Probes ◽

Genome-Wide, High-Resolution Detection of Copy Number, Loss of Heterozygosity, and Genotypes from Formalin-Fixed, Paraffin-Embedded Tumor Tissue Using Microarrays

Cancer Research ◽

10.1158/0008-5472.can-06-3597 ◽

2007 ◽

Vol 67 (6) ◽

pp. 2544-2551 ◽

Cited By ~ 53

Author(s):

Sharoni Jacobs ◽

Ella R. Thompson ◽

Yasuhito Nannya ◽

Go Yamamoto ◽

Raji Pillai ◽

...

Keyword(s):

High Resolution ◽

Loss Of Heterozygosity ◽

Copy Number ◽

Tumor Tissue ◽

Copy Number Loss ◽

Genome Wide ◽

Formalin Fixed Paraffin ◽

Copy number analysis by low coverage whole genome sequencing using ultra low-input DNA from formalin-fixed paraffin embedded tumor tissue

Genome Medicine ◽

10.1186/s13073-016-0375-z ◽

2016 ◽

Vol 8 (1) ◽

Cited By ~ 18

Author(s):

Tanjina Kader ◽

David L. Goode ◽

Stephen Q. Wong ◽

Jacquie Connaughton ◽

Simone M. Rowley ◽

...

Keyword(s):

Whole Genome Sequencing ◽

Genome Sequencing ◽

Copy Number ◽

Tumor Tissue ◽

Whole Genome ◽

Copy Number Analysis ◽

Formalin Fixed Paraffin ◽

Low Coverage ◽

Comprehensive Screening of Gene Copy Number Aberrations in Formalin-Fixed, Paraffin-Embedded Solid Tumors Using Molecular Inversion Probe–Based Single-Nucleotide Polymorphism Array

Journal of Molecular Diagnostics ◽

10.1016/j.jmoldx.2016.03.008 ◽

2016 ◽

Vol 18 (5) ◽

pp. 676-687 ◽

Cited By ~ 8

Author(s):

Rajesh R. Singh ◽

Meenakshi Mehrotra ◽

Hui Chen ◽

Alaa A. Almohammedsalim ◽

Ayesagul Sahin ◽

...

Keyword(s):

Copy Number ◽

Single Nucleotide Polymorphism Array ◽

Gene Copy Number ◽

Gene Copy ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Formalin Fixed Paraffin ◽

Molecular Inversion Probe ◽

Analytical validation of a melanoma diagnostic gene signature using formalin-fixed paraffin-embedded melanocytic lesions

Biomarkers in Medicine ◽

10.2217/bmm.15.11 ◽

2015 ◽

Vol 9 (5) ◽

pp. 407-416 ◽

Cited By ~ 7

Author(s):

M Bryan Warf ◽

Darl D Flake ◽

Doug Adams ◽

Alexander Gutin ◽

Kathryn A Kolquist ◽

...

Keyword(s):

Gene Signature ◽

Analytical Validation ◽

Melanocytic Lesions ◽

Formalin Fixed Paraffin ◽

Data Analysis Considerations for Detecting Copy Number Changes in Formalin-Fixed, Paraffin-Embedded Tissues

Cold Spring Harbor Protocols ◽

10.1101/pdb.ip071761 ◽

2012 ◽

Vol 2012 (11) ◽

pp. pdb.ip071761-pdb.ip071761 ◽

Cited By ~ 1

Author(s):

S. Jacobs

Keyword(s):

Data Analysis ◽

Copy Number ◽

Formalin Fixed Paraffin ◽

Copy Number Changes ◽

Abstract 3734: Development of a nanostring copy number assay for a customized 55 gene panel using challenging formalin-fixed paraffin-embedded (ffpe) tumor samples

10.1158/1538-7445.am2014-3734 ◽

2014 ◽

Author(s):

Tingdong Tang ◽

Wenge Shi ◽

Loretta Hipolito ◽

Julie Mayer ◽

Jelveh Lameh ◽

...

Keyword(s):

Copy Number ◽

Gene Panel ◽

Formalin Fixed Paraffin ◽

Copy Number Assay ◽

Ffpe Tumor ◽

Formalin-fixed paraffin-embedded clinical tissues show spurious copy number changes in array-CGH profiles

Clinical Genetics ◽

10.1111/j.1399-0004.2007.00882.x ◽

2007 ◽

Vol 72 (5) ◽

pp. 441-447 ◽

Cited By ~ 33

Author(s):

EA Mc Sherry ◽

A Mc Goldrick ◽

EW Kay ◽

AM Hopkins ◽

WM Gallagher ◽

...

Keyword(s):

Copy Number ◽

Array Cgh ◽

Formalin Fixed Paraffin ◽

Copy Number Changes ◽

Shallow whole genome sequencing for robust copy number profiling of formalin-fixed paraffin-embedded breast cancers

Experimental and Molecular Pathology ◽

10.1016/j.yexmp.2018.03.006 ◽

2018 ◽

Vol 104 (3) ◽

pp. 161-169 ◽

Cited By ~ 9

Author(s):

Suet-Feung Chin ◽

Angela Santonja ◽

Marta Grzelak ◽

Soomin Ahn ◽

Stephen-John Sammut ◽

...

Keyword(s):

Whole Genome Sequencing ◽

Genome Sequencing ◽

Copy Number ◽

Whole Genome ◽

Breast Cancers ◽

Formalin Fixed Paraffin ◽

Loss of Heterozygosity Detected in Formalin-fixed, Paraffin-embedded Tissue of Colorectal Carcinoma Using a Microsatellite Located Within the Deleted in Colorectal Carcinoma Gene

Diagnostic Molecular Pathology ◽

10.1097/00019606-199306000-00004 ◽

1993 ◽

Vol 2 (1) ◽

pp. 90-93 ◽

Cited By ~ 5

Author(s):

Tim H. -M. Huang ◽

James T. Quesenberry ◽

Matthew B. Martin ◽

Timothy S. Loy ◽

Alberto A. Diaz-Arias

Keyword(s):

Colorectal Carcinoma ◽

Loss Of Heterozygosity ◽

Formalin Fixed Paraffin ◽

Deleted In Colorectal Carcinoma ◽

Whole Genome Copy Number Analysis of Formalin Fixed Paraffin Embedded Samples Identifies Major Genomic Aberrations in Medulloblastoma

Cancer Genetics ◽

10.1016/j.cancergen.2014.06.019 ◽

2014 ◽

Vol 207 (6) ◽

pp. 290 ◽

Cited By ~ 1

Author(s):

Nathan J. Robison ◽

Ashley S. Margol ◽

Anju Shukla ◽

Rebekah J. Kennedy ◽

Eric Fung ◽

...

Keyword(s):

Copy Number ◽

Whole Genome ◽

Copy Number Analysis ◽

Genome Copy ◽

Formalin Fixed Paraffin ◽

Genomic Aberrations ◽

Genome Copy Number ◽