Prediction of potential deleterious nonsynonymous single nucleotide polymorphisms of HIF1A gene: A computational approach

2020 ◽  
Vol 88 ◽  
pp. 107354
Author(s):  
Zeinab Jamali ◽  
Mortaza Taheri-Anganeh ◽  
Mona Entezam
2010 ◽  
Vol 108 (6) ◽  
pp. 1497-1500 ◽  
Author(s):  
Frank Döring ◽  
Simone Onur ◽  
Alexandra Fischer ◽  
Marcel R. Boulay ◽  
Louis Pérusse ◽  
...  

Hypoxia-inducible factor-1α ( HIF1A) is a transcription factor regulating several genes in response to hypoxic stimuli. HIF1A target genes code for proteins involved in oxygen transport, glycolytic enzymes, and glucose transporters. We investigated whether single-nucleotide polymorphisms and haplotypes in the HIF1A gene are associated with endurance performance in the Genathlete cohort, which includes 316 Caucasian male elite endurance athletes (EEA) with a maximal oxygen uptake of 79.0 ± 3.5 ml·kg−1·min−1 (mean ± SD) and 304 Caucasian male sedentary controls with a maximal oxygen uptake of 40.1 ± 7.0 ml·kg−1·min−1. Six single-nucleotide polymorphisms (rs1951795, rs11158358, rs2301113, rs11549465, rs115494657, rs17099207) were genotyped with the TaqMan system. We found a nominal significant tendency for a difference between the two groups for HIF1A Pro582Ser (rs11549465) genotype distributions ( P χ2 = 0.017). Homozygotes of the Pro genotype were slightly more frequent in athletes than in controls (84 vs. 75%). Compared with Ser carriers, the odds ratio (OR) of being an EEA in Pro/Pro homozygotes was 1.77 [95% confidence interval (CI): 1.18–2.67, P = 0.006] compared with the other genotypes. A common HIF1A haplotype (frequency: 15%), including the rs11549465 Pro allele and the minor A allele of rs17099207 in the 3′ flanking region of the gene, showed a significant association with EEA status (OR: 2.37, 95% CI: 1.21–4.66, P = 0.012), whereas the most prevalent haplotype (frequency: 59%) comprising the rs11549465 Pro allele and the major G allele of rs1709920 showed no association with EEA status (OR: 0.93, 95% CI: 0.58–1.50, P = 0.769). We found preliminary evidence that the HIF1A Pro582Ser polymorphism and a common haplotype of the HIF1A gene may be associated with EEA status in Caucasian men.


2013 ◽  
Vol 8 (4) ◽  
pp. 469-483 ◽  
Author(s):  
Nitin Chitranshi ◽  
Amit K Tiwari ◽  
Pallavi Somvanshi ◽  
Pushpendra K Tripathi ◽  
Prahlad K Seth

2010 ◽  
Vol 34 (8) ◽  
pp. S75-S75
Author(s):  
Weifeng Zhu ◽  
Zhuoqi Liu ◽  
Daya Luo ◽  
Xinyao Wu ◽  
Fusheng Wan

2007 ◽  
Vol 28 (3) ◽  
pp. 161-164 ◽  
Author(s):  
Rosalind Arden ◽  
Nicole Harlaar ◽  
Robert Plomin

Abstract. An association between intelligence at age 7 and a set of five single-nucleotide polymorphisms (SNPs) has been identified and replicated. We used this composite SNP set to investigate whether the associations differ between boys and girls for general cognitive ability at ages 2, 3, 4, 7, 9, and 10 years. In a longitudinal community sample of British twins aged 2-10 (n > 4,000 individuals), we found that the SNP set is more strongly associated with intelligence in males than in females at ages 7, 9, and 10 and the difference is significant at 10. If this finding replicates in other studies, these results will constitute the first evidence of the same autosomal genes acting differently on intelligence in the two sexes.


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