Sex Differences in Childhood Associations between DNA Markers and General Cognitive Ability

2007 ◽  
Vol 28 (3) ◽  
pp. 161-164 ◽  
Author(s):  
Rosalind Arden ◽  
Nicole Harlaar ◽  
Robert Plomin
Keyword(s):  
Sex Differences ◽  
Single Nucleotide Polymorphisms ◽  
Cognitive Ability ◽  
Dna Markers ◽  
Community Sample ◽  
Nucleotide Polymorphisms ◽  
General Cognitive Ability ◽  
Single Nucleotide ◽  
The Difference

Abstract. An association between intelligence at age 7 and a set of five single-nucleotide polymorphisms (SNPs) has been identified and replicated. We used this composite SNP set to investigate whether the associations differ between boys and girls for general cognitive ability at ages 2, 3, 4, 7, 9, and 10 years. In a longitudinal community sample of British twins aged 2-10 (n > 4,000 individuals), we found that the SNP set is more strongly associated with intelligence in males than in females at ages 7, 9, and 10 and the difference is significant at 10. If this finding replicates in other studies, these results will constitute the first evidence of the same autosomal genes acting differently on intelligence in the two sexes.

The Implications of CaMK2A And MeCP2 Signalings In The Cognitive Ability of Adolescents

2021 ◽  
Author(s):  
Li-Ching Lee ◽  
Ming-Tsan Su ◽  
Hsing-Ying Huang ◽  
Ying-Chun Cho ◽  
Ting-Kuang Yeh ◽  
...  
Keyword(s):  
High School Students ◽  
Single Nucleotide Polymorphisms ◽  
Cognitive Ability ◽  
Signaling Pathway ◽  
Collective Effects ◽  
Nucleotide Polymorphisms ◽  
School Students ◽  
Single Nucleotide ◽  
Glutamatergic Signaling

Abstract The glutamatergic signaling pathway is involved in molecular learning and human cognitive ability. Specific single nucleotide polymorphisms (SNPs) in the genes encoding NMDA receptor subunits have been associated with neuropsychiatric disorders by altering glutamate transmission. But how these polymorphisms associated with cognition and brain psychological activities were rarely been explored in healthy adolescents. In this study, we screened SNPs of the glutamatergic signaling pathway to identify genetic variants associated with cognitive ability. We found that single nucleotide polymorphisms (SNPs) in subunits of ionotropic glutamate receptors, including GRIA1, GRINN1, GRIN2B, GRIN2C, GRIN3A, GRIN3B, and Calcium/ Calmodulin-dependent protein kinase II α (CaMK2A) associated with the cognitive function of students. Importantly, the plasma CaMK2A levels correlated positively with the cognitive ability of senior high school students in Taiwan. We demonstrated that the elevated CaMK2A increased its autophosphorylation at T286 and increased the expression of its downstream targets, including GRIA1 and phosphor GRIA1 in vivo. Additionally, the Methyl CpG binding protein 2 (MeCP2), a downstream target of CaMK2A, can activate the expression of CaMK2A, suggesting that MeCP2 and CaMK2A could form a positive feedback loop. In summary, we concluded that members of the glutamatergic signaling, CaMK2A, and MeCP2 were implicated in the cognitive ability of adolescents, and alternating in the CaMK2A expressing may have collective effects on the cognitive ability of youths.

In search for polymorphic DNA markers to increase resistance and production level of hens

2020 ◽  
Vol 1 (12) ◽  
pp. 98-104
Author(s):  
I. I. Kochish ◽  
◽  
О. V. Myasnikova ◽  
V. V. Martynov ◽  
V. I. Smolensky ◽  
...  
Keyword(s):  
Single Nucleotide Polymorphisms ◽  
Dopamine Receptor ◽  
Dna Markers ◽  
Production Level ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide ◽  
Pcr Rflp ◽  
Productive Traits ◽  
Pure Lines ◽  
The Relationship

In the article, the authors assess the prospect of using genetic polymorphisms to predict resistance to diseases and a possible enlarge in chicken production level. Using the PCR-RFLP method, we analyzed the SNP frequencies in the genes of myostatin (MSTN, or GDF-8), proopiomelanocortin (POMC), and dopamine receptor D2 (DRD2) in chickens of the pure lines of the Smena-8 broiler hybreed – B6, B7m / o (slow-feathering), B7b / o (fast-fledging) FSBI "Breeding and Genetic Center “Smena”. The relationship between the studied single nucleotide polymorphisms and the productive traits of chickens was determined. The assessment of the possibilities of using polymorphisms to increase the resistance and productivity of linear birds.

scholarly journals Tumor necrosis factor (TNF)-α gene +489 polymorphisms: association with psoriatic arthritis

2013 ◽  
Vol 86 (1) ◽  
Author(s):  
G. Murdaca ◽  
F. Puppo
Keyword(s):  
Psoriatic Arthritis ◽  
Tumor Necrosis Factor ◽  
Single Nucleotide Polymorphisms ◽  
Tumor Necrosis ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide ◽  
Tnf Α ◽  
The Difference ◽  
Necrosis Factor

Objective of this work was to investigate the role of single nucleotide polymorphisms (SNPs) at position +489 of the tumor necrosis factor (TNF)-α gene in generic susceptibility and severity of psoriatic arthritis (PsA). Fifty-seven Caucasian PsA patients diagnosed according to CASPAR criteria and 155 healthy matched controls were studied. PASI score, DAS28 and Disability INdex HAQ were calculated. Genomic DNA was extracted from peripheral blood samples and SNPs +489 G>A (rs 80267959) were amplified by PCR. The SNP +489 genotype was significantly associated with PsA susceptibility (p=0.0136) and severity of clinical and laboratory parameters (p values ranging from 0.016 to 2.908 x 10-12). The difference in severity was accounted for by the difference between the AA and GA genotypes with respect to the GG genotype. These findings suggest that TNF-α gene polymorphisms may influence PsA susceptibility and severity. Psoriatics arthritis (PsA) is a complex immunemediated disease that results from the interplay between multiple genetic and environmental factor [1]. Although the pathogenesis of PsA remains elusive, there is evidence that genetic factors may contribute to the etiology of the disease [2]. Is has been estimated that at least one third of the genetic contribution to PsA resides in the major histocompatibility complex (MHC) region [2]. The tumor necrosis factor (TNF)-α gene, which is located in the short arm of chromosome 6 in the MHC class III region between the HLA-B and HLA-DR genes, has been proposed as a major candidate gene in PsA [3]. This hypothesis is supported by studies which have found high serum, synovial fluid and synovial membrane TNF-α levels in patients with PsA [4,5]. Several single nucleotide polymorphisms (PNPs) have been identified in the TNF-α gene promoter [6]. In particular, two common polymorphisms, namely G to A substitutions at positions -238 and -308 have been studied in patients with PsA. However, association studies of these two TNF-α polymorphisms and genetic susceptibility to PsA have lead to conflicting results [7-12]. Previous studies have indicated the potential role of the SNP at +489 position in the first intron of the TNF-α gene in the susceptibility to some rheumatic autoimmune diseases like rheumatoid arthritis [13], systemic lupus erythematosus [14] and systemic sclerosis [15]. However, to our present knowledge, studies on the association of +489 polymorphism with PsA susceptibility and response to TNF-α inhibitors are not reported in the literature. Is this study we investigated the role of SNPs at +489 within the TNF-α gene in PsA susceptibility and severity.

scholarly journals The association between gsto1 polymorphisms and arsenic methylation of prenatal arsenic exposed infants

2018 ◽  
Vol 15 (2) ◽  
pp. 223-230
Author(s):  
Tạ Thị Bình Tạ Thị Bình Tạ Thị Bình ◽  
Trần Phương Thảo ◽  
Nguyễn Khắc Hải ◽  
Nguyễn Huy Hoàng
Keyword(s):  
Single Nucleotide Polymorphisms ◽  
Arsenic Exposure ◽  
Nucleotide Polymorphisms ◽  
Glutathione S Transferase ◽  
Negative Effects ◽  
Single Nucleotide ◽  
Arsenic Methylation ◽  
Urinary Arsenic ◽  
The Difference ◽  
High Level

The trace element arsenic naturally presents in the environment. Arsenic is the essential factor to the human body at low level, however it causes environmental pollution and have negative effects to health at high level. Recently, arsenic contamination as well as its effects on public health, especially infants and children is increasingly becoming important and serious issues in worldwide. Glutathione S-transferase omega-1 (GSTO1) is a phase II enzymatic detoxification of xenobiotics in variety of animals including humans; to catalyze the arsenic methylation. The difference of urinary arsenic component in each individual may relate to the genetic polymorphism. To evaluate the variations of single nucleotide polymorphisms of GSTO1, PCR-RFLP technology was ultilized. Single nucleotide polymorphisms (SNPs) genotype of 150 cohort blood samples at GSTO1 Thr->Asn (rs15032), GSTO1 Ala->Val (rs11509439) and GSTO1 Ala->Asp (rs4925) were detected. The association between GSTO1 polymorphisms and prenatal arsenic exposure was evaluated by statistical analysis such as SPSS software version 20, t-test and oneway ANOVA. The results showed that GSTO1 Ala->Asp (rs4925) was statistically associated with MMA/iAs (p = 0.041). Differences between ratio of MMA/iAs and genotypes were checked by Tukey-Kramer method, along with oneway ANOVA showed that Individuals taking the AA genotype had higher MMA/ iAs ratio than individuals carrying the CC genotype, with a statistically significant association (p = 0.044), also clearly higher than the individuals carrying AC genotype, significant at p = 0.046. Therefore, it is possible that individuals carrying the AA genotype in the polymorphism have higher arsenic excretion than individuals with CC and AC genotypes

scholarly journals JUSTIFICATION OF CANDIDATE POLYMORPHISMS USAGE IN MARKER-ASSISTED SELECTION OF UKRAINIAN MEATY PIG BREED

2020 ◽  
pp. 149-156
Author(s):  
Vladimir Rossokha ◽  
Yelyzaveta Oliinychenko ◽  
Yelena Boyko ◽  
Elena Zaderikhina
Keyword(s):  
Single Nucleotide Polymorphisms ◽  
Dna Markers ◽  
Population Analysis ◽  
Farm Animals ◽  
Nucleotide Polymorphisms ◽  
Economic Traits ◽  
Genetic Population ◽  
Single Nucleotide ◽  
Marker Selection ◽  
Genotype Frequencies

Effective selection in pig breeding is not possible without involvement of new approaches which involve the assessment animal genotypes at the DNA level. The development of methods for determining the polymorphisms in candidate genes that are responsible for the manifestation of economic traits is the basis of modern marker selection technology (MAS). Currently, a number of DNA markers have been developed for use in the breeding of farm animals. In this case, the most informative were single nucleotide polymorphisms (SNPs) of genes. However, despite the significant amount of scientific research, the problem of development and implementation of DNA markers for breeds of Ukrainian selection remains relevant. The results of SNPs study of RYR1, CTSF and CTSD genes by PCR-RFLP method are presented. The initial stage for implementing marker selection for single nucleotide polymorphisms is conducting genetic-population analysis in the studied population of Ukrainian Meaty pig breed. It was found that SNP RYR1 g. 1843 C>T was characterized by low polymorphism, the minor allele g. 1843 T met with a frequency of q = 0.05. SNP CTSD g. 70 G>A had a low level of representativeness, allele g. 70 A prevailed at a frequency of q = 0.92. It was found that SNP CTSF g. 22 G>C was characterized by a sufficient level of representativeness, both alleles were detected with a predominance of the allele frequency g. 22 G (q=0.80). In the population of Ukrainian Meaty pig breed, there was a statistically confirmed deviation of genotype frequencies from SNP-balanced CTSF g. 22 G> C (χ2 = 28.125) and CTSD g. 70 G> A (χ2 = 26,518). In the future, SNPs of CTSF, CTSD genes can be used for associative studies to find a link between markers and signs of pig productivity and the introduction of marker-associated selection in the UM pig breed.

scholarly journals Genome-Wide Variation Analysis of Four Vegetable Soybean Cultivars Based on Re-Sequencing

Plants ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 28
Author(s):  
Xiaomin Yu ◽  
Xujun Fu ◽  
Qinghua Yang ◽  
Hangxia Jin ◽  
Longming Zhu ◽  
...  
Keyword(s):  
Single Nucleotide Polymorphisms ◽  
Genetic Research ◽  
Value Added ◽  
Enrichment Analysis ◽  
Nucleotide Polymorphisms ◽  
Vegetable Soybean ◽  
Single Nucleotide ◽  
Coverage Ratio ◽  
Simple Sequence Repeat Analysis ◽  
The Difference

Vegetable soybean is a type of value-added specialty soybean, served as a fresh vegetable or snack in China. Due to the difference from other types, it is important to understand the genetic structure and diversity of vegetable soybean for further utilization in breeding programs. The four vegetable cultivars, Taiwan-75, Zhexiandou No. 8, Zhexian No. 9 and Zhexian No. 10 are popular soybean varieties planted in Zhejiang province, and have large pods and intermediate maturity. The clustering showed a close relationship of these four cultivars in simple sequence repeat analysis. To reveal the genome variation of vegetable soybean, these four improved lines were analyzed by whole-genome re-sequencing. The average sequencing depth was 7X and the coverage ratio of each cultivar was at least more than 94%. Compared with the reference genome, a large number of single-nucleotide polymorphisms, insertion/deletions and structure variations were identified with different chromosome distributions. The average heterozygosity rate of the single-nucleotide polymorphisms was 11.99% of these four cultivars. According to the enrichment analysis, there were 23,371 genes identified with putative modifications, and a total of 282 genes were related to carbohydrate metabolic processes. These results provide useful information for genetic research and future breeding, which can facilitate the selection procedures in vegetable soybean breeding.

Development of a simple method for the determination of single nucleotide polymorphisms

2010 ◽  
Vol 34 (8) ◽  
pp. S75-S75
Author(s):  
Weifeng Zhu ◽  
Zhuoqi Liu ◽  
Daya Luo ◽  
Xinyao Wu ◽  
Fusheng Wan
Keyword(s):  
Single Nucleotide Polymorphisms ◽  
Nucleotide Polymorphisms ◽  
Simple Method ◽  
Single Nucleotide
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