Reconstruction of the binding pathway of an anti-HIV drug, Indinavir, in complex with the HTLV-1 protease using unaggregated unbiased molecular dynamics simulation

2022 ◽  
Vol 96 ◽  
pp. 107616
Author(s):  
Farzin Sohraby ◽  
Hassan Aryapour
2020 ◽  
Vol 16 ◽  
Author(s):  
Elnaz Ebrahim Zadeh ◽  
Rouhollah Vahabpour ◽  
Amirreza Dowlati Beirami ◽  
Zahra Hajimahdi ◽  
Afshin Zarghi

Background: HIV-1 integrase (IN) has been considered as an important target for the development of novel antiHIV-1 drugs. Objective: The aim of study is to design a novel groups of HIV IN inhibitors Method: In this study, we presented a novel series of 4-oxo-4,10-dihydrobenzo[4,5]imidazo[1,2-a]pyrimidine-3-carboxylic acid derivatives by structural modification of N-arylindole -diketoacids as a well-known group of IN inhibitors. Results: Based on in-vitro anti-HIV-1 activity in cell-based assay, compounds 5, 6a and 6k displayed moderate to good inhibitory activity with EC50 values of 4.14, 1.68 and 0.8 M, respectively. However, integrase inhibition assay showed that most of analogues did not have significant effects against integrase enzyme except compound 5 with IC50 value of 45 M. Our results indicated that compound 6k was the best one among synthesized compounds with an EC50 of 0.8 M and SI of 175. Docking and molecular dynamics simulation studies were also performed to provide some insights into probable mechanism of tested compounds. Conclusion: These findings suggest that 4-oxo-4,10-dihydrobenzo[4,5]imidazo[1,2-a]pyrimidine-3-carboxylic acid derivatives may consider as promising lead compounds for development of new anti-HIV-1 drugs.


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