Complete genome sequence data of Lactobacillus sakei MBEL1397 isolated from kimchi

Bacterial panicle blight caused by Burkholderia glumae is a major disease in rice production worldwide. Currently, only a few whole-genome sequences of B. glumae strains isolated in the U.S. are available. Here, we report the complete genome sequence of four B. glumae strains, including three virulent strains (336gr-1, 411gr-6, and 957856-41-c) and the non-pathogenic strain B. glumae 257sh-1, which were isolated from rice fields in Louisiana (336gr-1, 957856-41-c, and 257sh-1) and Arkansas (411gr-6). The whole-genome sequence data of B. glumae strains will contribute to investigations of the molecular mechanism underlying bacterial pathogenicity and virulence to rice plants.

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Complete Genome Sequence Data of Nonpathogenic and Nonantagonistic Strain of Rhizobium vitis VAR06-30 Isolated From Grapevine Rhizosphere

Molecular Plant-Microbe Interactions ◽

10.1094/mpmi-07-20-0182-a ◽

2020 ◽

Vol 33 (11) ◽

pp. 1283-1285

Author(s):

Yoshiteru Noutoshi ◽

Atsushi Toyoda ◽

Tomoya Ishii ◽

Kirara Saito ◽

Megumi Watanabe ◽

...

Keyword(s):

Genome Sequence ◽

Complete Genome Sequence ◽

Complete Genome ◽

Root Nodule ◽

Sequence Data ◽

Antagonistic Activity ◽

Nodule Bacteria ◽

Genome Sequence Data ◽

The Family ◽

Open Access Article

Rhizobium (Agrobacterium) is one genus in the family Rhizobiaceae. Most of the species are epi- or endophytic bacteria which include tumorigenic or rhizogenic pathogens, root nodule bacteria, and commensal endosymbionts. Rhizobium vitis strain VAR06-30 is a commensal bacterium without pathogenicity which was isolated from a rootstock of grapevine in Japan. It also does not have antagonistic activity to the pathogenic strain of R. vitis. Here, we show the complete genome sequence data with annotation of R. vitis VAR06-30 which was analyzed by sequence reads obtained from both PacBio and Illumina platforms. This genome sequence would contribute to the understanding of evolutionary lineage and characteristics of Rhizobium commensal bacteria. [Formula: see text] Copyright © 2020 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

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Complete Genome Sequence of a Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Virus Variant

Journal of Virology ◽

10.1128/jvi.01281-12 ◽

2012 ◽

Vol 86 (16) ◽

pp. 8906-8906 ◽

Cited By ~ 8

Author(s):

Chengbao Wang ◽

Qin Zhao ◽

Chao Liang ◽

Lu Dang ◽

Yuping Ma ◽

...

Keyword(s):

Genome Sequence ◽

Causative Agent ◽

Complete Genome Sequence ◽

Complete Genome ◽

Sequence Data ◽

Nonstructural Protein ◽

Respiratory Syndrome Virus ◽

Highly Pathogenic ◽

Virus Variant ◽

Accelerate Evolution

Following the 2006 outbreaks of the highly pathogenic porcine reproductive and respiratory syndrome, the causative agent was identified as the highly pathogenic porcine reproductive and respiratory syndrome virus (HP-PRRSV). To investigate whether the HP-PRRSV variant continues circulating and accelerating evolution, we sequenced and analyzed the complete genome of the identified HP-PRRSV field strain SD16. The sequence data indicate that the HP-PRRSV variant continues to prevail and accelerate evolution, especially in the nonstructural protein.

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Complete Genome Sequence of Campylobacter armoricus CA639, Which Carries Two Plasmids, Compiled Using Oxford Nanopore and Illumina Sequencing Technologies

Microbiology Resource Announcements ◽

10.1128/mra.01309-19 ◽

2020 ◽

Vol 9 (1) ◽

Author(s):

Amine M. Boukerb ◽

Julien Schaeffer ◽

Joëlle Serghine ◽

Gregory Carrier ◽

Françoise S. Le Guyader ◽

...

Keyword(s):

Genome Sequence ◽

Illumina Sequencing ◽

Complete Genome Sequence ◽

Complete Genome ◽

Sequence Data ◽

Hybrid Approach ◽

Circular Chromosome ◽

Sequencing Technologies ◽

Oxford Nanopore

As determined by a hybrid approach combining Oxford Nanopore MinION and Illumina MiniSeq sequence data, Campylobacter armoricus strain CA639 harbored a circular chromosome of 1,688,169 bp with a G+C content of 28.47% and two plasmids named pCA639-1 and pCA639-2, with lengths of 51,123 and 28,139 bp, and G+C contents of 26.5% and 28.45%, respectively.

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