3D-QSAR studies on quinazoline antifolate thymidylate synthase inhibitors by CoMFA and CoMSIA models

2010 ◽  
Vol 45 (4) ◽  
pp. 1560-1571 ◽  
Author(s):  
Vivek Srivastava ◽  
S.P. Gupta ◽  
M.I. Siddiqi ◽  
B.N. Mishra
2020 ◽  
Vol 16 (3) ◽  
pp. 224-237
Author(s):  
Sheenu Mittal ◽  
Ankit Gupta ◽  
Monika ◽  
Richa ◽  
Renu Chadha ◽  
...  

Introduction: Lung cancer is presumed to be the most notable cause of morbidity and impermanency in human beings caused by uncontrolled cell proliferation of lung tissue which results in abrupt synthesis of DNA. Methods: Prevention of DNA synthesis can show distinctive effect on lung cancer by utilizing Thymidylate synthase (TS), a key rate-limiting enzyme in the DNA synthesis process. However, the available finite aggregate of clinically approved blockers and their corresponding side effects lead to the urgent origination of novel inhibitors. Results and Discussion: In silico approaches (QSAR and molecular docking) have been accomplished to discover new potential inhibitors of TS providing a new strategy to evolve novel thymidylate synthase inhibitors functional in lung cancer. Conclusion: In the present study chemical features of a series of compounds alongside their activities alternating over numerous orders of magnitudes was utilized to generate QSAR models, and these could be further employed to predict the activity of new designed compounds. 3D‒QSAR kNNSW based model with decent statistical data having q2 approximately 95% (internal validation) and 80% (external validation) has validated the importance of steric feature. Further docking analysis using D‒score and ligand receptor interactions indicated that all the studied compounds are well accommodated in the binding pocket of TS and disparities in the activity are controlled by hydrogen and hydrophobic interactions.


2012 ◽  
Vol 29 (5) ◽  
pp. 438-443
Author(s):  
Hai-bin LUO ◽  
Guo-wen CHEN ◽  
Yong-xian SHAO ◽  
Zhe LI ◽  
Ming LIU ◽  
...  

2017 ◽  
Vol 14 (7) ◽  
Author(s):  
Chunqi Hu ◽  
Liang Hong ◽  
Jun Li ◽  
Wenting Du
Keyword(s):  
3D Qsar ◽  

2018 ◽  
Vol 15 (7) ◽  
pp. 721-732
Author(s):  
Liqiang Meng ◽  
Liqian Sun ◽  
Chaoqun Yan ◽  
Dongxiao Cui ◽  
Jingrun Chen ◽  
...  

2019 ◽  
Vol 16 (8) ◽  
pp. 868-881
Author(s):  
Yueping Wang ◽  
Jie Chang ◽  
Jiangyuan Wang ◽  
Peng Zhong ◽  
Yufang Zhang ◽  
...  

Background: S-dihydro-alkyloxy-benzyl-oxopyrimidines (S-DABOs) as non-nucleoside reverse transcriptase inhibitors have received considerable attention during the last decade due to their high potency against HIV-1. Methods: In this study, three-dimensional quantitative structure-activity relationship (3D-QSAR) of a series of 38 S-DABO analogues developed in our lab was studied using Comparative Molecular Field Analysis (CoMFA) and Comparative Molecular Similarity Indices Analysis (CoMSIA). The Docking/MMFF94s computational protocol based on the co-crystallized complex (PDB ID: 1RT2) was used to determine the most probable binding mode and to obtain reliable conformations for molecular alignment. Statistically significant CoMFA (q2=0.766 and r2=0.949) and CoMSIA (q2=0.827 and r2=0.974) models were generated using the training set of 30 compounds on the basis of hybrid docking-based and ligand-based alignment. Results: The predictive ability of CoMFA and CoMSIA models was further validated using a test set of eight compounds with predictive r2 pred values of 0.843 and 0.723, respectively. Conclusion: The information obtained from the 3D contour maps can be used in designing new SDABO derivatives with improved HIV-1 inhibitory activity.


2014 ◽  
Vol 10 (7) ◽  
pp. 711-723 ◽  
Author(s):  
P. Chaitanya ◽  
G. Reddy ◽  
G. Varun ◽  
L.M. Srikanth ◽  
V.V.S.R. Prasad ◽  
...  

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