Determination of internal controls for quantitative real time RT-PCR analysis of the effect of Edwardsiella tarda infection on gene expression in turbot (Scophthalmus maximus)

2011 ◽  
Vol 30 (2) ◽  
pp. 720-728 ◽  
Author(s):  
Wei Dang ◽  
Li Sun
2012 ◽  
Vol 2012 ◽  
pp. 1-9 ◽  
Author(s):  
Humberto Osvaldo Schwartz-Filho ◽  
Kostas Bougas ◽  
Paulo G. Coelho ◽  
Ying Xue ◽  
Mariko Hayashi ◽  
...  

Aim. This study aimed to observe the morphological and molecular effect of laminin-1 doping to nanostructured implant surfaces in a rabbit model.Materials and Methods. Nanostructured implants were coated with laminin-1 (test; dilution, 100 μg/mL) and inserted into the rabbit tibiae. Noncoated implants were used as controls. After 2 weeks of healing, the implants were removed and subjected to morphological analysis using scanning electron microscopy (SEM) and gene expression analysis using the real-time reverse transcriptase-polymerase chain reaction (RT-PCR).Results. SEM revealed bony tissue attachment for both control and test implants. Real-time RT-PCR analysis showed that the expression of osteoblast markers RUNX-2, osteocalcin, alkaline phosphatase, and collagen I was higher (1.62-fold, 1.53-fold, 1.97-fold, and 1.04-fold, resp.) for the implants modified by laminin-1 relative to the control. All osteoclast markers investigated in the study presented higher expression on the test implants than controls as follows: tartrate-resistant acid phosphatase (1.67-fold), calcitonin receptor (1.35-fold), and ATPase (1.25-fold). The test implants demonstrated higher expression of inflammatory markers interleukin-10 (1.53-fold) and tumour necrosis factor-α(1.61-fold) relative to controls.Conclusion. The protein-doped surface showed higher gene expression of typical genes involved in the osseointegration cascade than the control surface.


2009 ◽  
Vol 3 (4) ◽  
pp. 194-204 ◽  
Author(s):  
T. Svingen ◽  
C.M. Spiller ◽  
K. Kashimada ◽  
V.R. Harley ◽  
P. Koopman

2003 ◽  
Vol 88 (4) ◽  
pp. 516-520 ◽  
Author(s):  
A Tchirkov ◽  
C Rolhion ◽  
J-L Kémény ◽  
B Irthum ◽  
S Puget ◽  
...  

2005 ◽  
Vol 102 (3-4) ◽  
pp. e113-e122 ◽  
Author(s):  
Gerard Elberg ◽  
Dorit Elberg ◽  
Charlotte J. Logan ◽  
Lijuan Chen ◽  
Martin A. Turman

2006 ◽  
Vol 133 (1) ◽  
pp. 53-61 ◽  
Author(s):  
Mohamed A.I. Abou El Hassan ◽  
Stefan R. Braam ◽  
Frank A.E. Kruyt

2005 ◽  
Vol 71 (6) ◽  
pp. 2949-2954 ◽  
Author(s):  
K. Klitgaard Nielsen ◽  
M. Boye

ABSTRACT The aims of the present investigation were to develop and test a sensitive and reproducible method for the study of gene expression in the porcine lung pathogen Actinobacillus pleuropneumoniae by real-time quantitative reverse transcription (RT)-PCR and to evaluate a number of suitable internal controls, as such controls have not been defined yet for this bacterium. Bacterial gene expression was studied during in vitro exponential and early stationary growth in medium with and without sufficient iron, respectively. First, the stability of expression of five genes, the glyA, tpiA, pykA, recF, and rhoAP genes involved in basic housekeeping, was evaluated on the basis of the mean pairwise variation. All the housekeeping genes included were stably expressed under the conditions investigated and consequently were included in the normalization procedure. Next, the geometric mean of the internal control genes was used to correct five genes of interest. These genes were three genes involved in iron acquisition (tbpA, exbB, and fhuD), the heat shock protein gene groEL, and a putative quorum-sensing gene (luxS). The level of tbpA, exbB, and fhuD expression in A. pleuropneumoniae showed significant up-regulation under iron-restricted conditions compared to bacteria grown in medium with sufficient iron. The observed expression patterns of the genes of interest were consistent with previous observations. This study therefore lends further support to the use of real-time quantitative RT-PCR, with the glyA, tpiA, pykA, recF, and rhoAP genes as internal controls, for future similar gene expression studies in A. pleuropneumoniae.


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