Accumulation, functional annotation, and comparative analysis of expressed sequence tags in eggplant (Solanum melongena L.), the third pole of the genus Solanum species after tomato and potato

Gene ◽  
2010 ◽  
Vol 450 (1-2) ◽  
pp. 76-84 ◽  
Author(s):  
Hiroyuki Fukuoka ◽  
Hirotaka Yamaguchi ◽  
Tsukasa Nunome ◽  
Satomi Negoro ◽  
Koji Miyatake ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Expressed Sequence Tags ◽  
Functional Annotation ◽  
Solanum Melongena ◽  
Solanum Species ◽  
The Third ◽  
Expressed Sequence

Comparative analysis and characterization of expressed sequence tags in gilthead sea bream (Sparus aurata) liver and embryos

Aquaculture ◽  
2005 ◽  
Vol 243 (1-4) ◽  
pp. 69-81 ◽  
Author(s):  
Elena Sarropoulou ◽  
Deborah Mary Power ◽  
Antonios Magoulas ◽  
Robert Geisler ◽  
Georgios Kotoulas
Keyword(s):  
Comparative Analysis ◽  
Expressed Sequence Tags ◽  
Sparus Aurata ◽  
Gilthead Sea Bream ◽  
Sea Bream ◽  
Expressed Sequence

Comparative analysis of 82 expressed sequence tags from a cattle ovary cDNA library

1998 ◽  
Vol 9 (7) ◽  
pp. 545-549 ◽  
Author(s):  
R.Z. Ma ◽  
M.J.T. van Eijk ◽  
J.E. Beever ◽  
G. Guérin ◽  
C.L. Mummery ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Cdna Library ◽  
Expressed Sequence Tags ◽  
Expressed Sequence

Characterization of intronic structures and alternative splicing in Phytophthora sojae by comparative analysis of expressed sequence tags and genomic sequences

2011 ◽  
Vol 57 (2) ◽  
pp. 84-90 ◽  
Author(s):  
Danyu Shen ◽  
Wenwu Ye ◽  
Suomeng Dong ◽  
Yuanchao Wang ◽  
Daolong Dou
Keyword(s):  
Comparative Analysis ◽  
Alternative Splicing ◽  
Expressed Sequence Tags ◽  
Phytophthora Sojae ◽  
Genomic Sequences ◽  
Splice Sites ◽  
Distinct Phylogenetic Lineage ◽  
Expressed Sequence ◽  
Complete Genomic

The oomycetes, a distinct phylogenetic lineage of fungus-like microorganisms, are heterokonts (stramenopiles) belonging to the supergroup Chromalveolata. Although the complete genomic sequences of a number of oomycetes have been reported, little information regarding the introns therein is available. Here, we investigated the introns of Phytophthora sojae , a pathogen that causes soybean root and stem rot, by a comparative analysis of genomic sequences and expressed sequence tags. A total of 4013 introns were identified, of which 96.6% contained canonical splice sites. The P. sojae genome possessed features distinct from other organisms at 5′ splice sites, polypyrimidine tracts, branch sites, and 3′ splice sites. Diverse repeating sequences, ranging from 2 to 10 nucleotides in length, were found at more than half of the intron–exon boundaries. Furthermore, 122 genes underwent alternative splicing. These data indicate that P. sojae has unique splicing mechanisms, and recognition of those mechanisms may lead to more accurate predictions of the location of introns in P. sojae and even other oomycete species.

Comparative analysis of expressed sequence tags from cold-acclimated and non-acclimated leaves of Rhododendron catawbiense Michx

Planta ◽  
2005 ◽  
Vol 221 (3) ◽  
pp. 406-416 ◽  
Author(s):  
Hui Wei ◽  
Anik L. Dhanaraj ◽  
Lisa J. Rowland ◽  
Yan Fu ◽  
Stephen L. Krebs ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Expressed Sequence Tags ◽  
Expressed Sequence

Comparative analysis of expressed sequence tags from different organs of Vitis vinifera L.

2005 ◽  
Vol 5 (4) ◽  
pp. 208-217 ◽  
Author(s):  
C. Moser ◽  
C. Segala ◽  
P. Fontana ◽  
I. Salakhudtinov ◽  
P. Gatto ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Vitis Vinifera ◽  
Expressed Sequence Tags ◽  
Vitis Vinifera L ◽  
Expressed Sequence

scholarly journals A Genetic Linkage Map for Zebrafish: Comparative Analysis and Localization of Genes and Expressed Sequences

1999 ◽  
Vol 9 (4) ◽  
pp. 334-347 ◽  
Author(s):  
Michael A. Gates ◽  
Lisa Kim ◽  
Elizabeth S. Egan ◽  
Timothy Cardozo ◽  
Howard I. Sirotkin ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Expressed Sequence Tags ◽  
Genetic Maps ◽  
Genetic Screens ◽  
Sequence Tagged Sites ◽  
A Genome ◽  
Mammalian Genes ◽  
Map Analysis ◽  
Gene Maps ◽  
Expressed Sequence

Genetic screens in zebrafish (Danio rerio) have isolated mutations in hundreds of genes with essential functions. To facilitate the identification of candidate genes for these mutations, we have genetically mapped 104 genes and expressed sequence tags by scoring single-strand conformational polymorphisms in a panel of haploid siblings. To integrate this map with existing genetic maps, we also scored 275 previously mapped genes, microsatellites, and sequence-tagged sites in the same haploid panel. Systematic phylogenetic analysis defined likely mammalian orthologs of mapped zebrafish genes, and comparison of map positions in zebrafish and mammals identified significant conservation of synteny. This comparative analysis also identified pairs of zebrafish genes that appear to be orthologous to single mammalian genes, suggesting that these genes arose in a genome duplication that occurred in the teleost lineage after the divergence of fish and mammal ancestors. This comparative map analysis will be useful in predicting the locations of zebrafish genes from mammalian gene maps and in understanding the evolution of the vertebrate genome.

scholarly journals Comparative analysis of 87,000 expressed sequence tags from the fumonisin-producing fungus Fusarium verticillioides

2005 ◽  
Vol 42 (10) ◽  
pp. 848-861 ◽  
Author(s):  
Daren W. Brown ◽  
Foo Cheung ◽  
Robert H. Proctor ◽  
Robert A.E. Butchko ◽  
Li Zheng ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Expressed Sequence Tags ◽  
Fusarium Verticillioides ◽  
Expressed Sequence
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